G1444227


Basic Information

Item Value
gene id G1444227
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36911630 ~ 36914019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1653205
tgtttgaagatgTACAAAAATGAAAGTAAAAAGACACAAACAAAACTTTAAAACGGGAAGCATAGATCTACCAGCTTCTTAGACTttcaatgacagatctataactcatatttctatgtgaatttggttgggtgcCCAAAAAGTTGCATATTGGAGCTTTAAGTTATAAGCAATGGCTGTACTTTCTAGTTGCCTGTGCTTATGTCTACATTAAGTATGGATGTGCTTGACATGACTTAAGTCCATTGCATGTCCACATTCATGCACTGAAATAAGATATTCTACATAAAATATTGTTTTGGGTCATTCACATCATGGAAAGTCGACATTGATAGGACTTGTGTTTTTACTTTTACATTCTTGACAGGAAAATGATTCTATGCTCAAAGCATCTCCTTATTCTTGTTGGGTTACTTGAATGACATCCCTCATTTTCGTGACAGCAGCTGGTTCTCCATGTCCTCCAATTGTGCAGTCATACCCGCCAGTTTTGTTTTCAGCTGCTCCAGAGTGGACATTGTTGCTTGCTGGAACTCAACCAGACTCTCACAGGCACATGGGTCTTTCACCTCAAGctctccctggctctcctctG

Function

NR:

description
matrilin-4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1653205 True 595 lncRNA 0.39 2 36911630 36914019

Neighbor

gene id symbol gene type direction distance location
LOC110493846 NA coding upstream 109331 36795839 ~ 36802299 (+)
LOC110493845 LOC106565027 coding upstream 141848 36723934 ~ 36769782 (+)
if6 if6 coding upstream 234884 36670778 ~ 36676746 (+)
LOC118940420 NA coding upstream 245812 36660348 ~ 36665818 (+)
mmp24 mmp24 coding upstream 269911 36573971 ~ 36641719 (+)
rbpjl LOC106565033 coding downstream 37152 36951171 ~ 36978642 (+)
LOC110493852 spag1 coding downstream 115562 37029581 ~ 37033137 (+)
LOC118940422 NA coding downstream 197233 37111252 ~ 37112362 (+)
LOC118940423 NA coding downstream 381303 37295322 ~ 37301815 (+)
LOC118940100 NA coding downstream 388863 37302882 ~ 37307944 (+)
G1444209 NA non-coding upstream 33864 36877104 ~ 36877766 (+)
G1444205 NA non-coding upstream 41866 36869490 ~ 36869764 (+)
G1444200 NA non-coding upstream 47786 36863498 ~ 36863844 (+)
G1444199 NA non-coding upstream 48931 36862484 ~ 36862699 (+)
G1444197 NA non-coding upstream 55825 36855469 ~ 36855805 (+)
G1444235 NA non-coding downstream 7572 36921591 ~ 36921803 (+)
G1444239 NA non-coding downstream 11248 36925267 ~ 36925649 (+)
G1444240 NA non-coding downstream 11708 36925727 ~ 36926006 (+)
G1444245 NA non-coding downstream 18042 36932061 ~ 36932349 (+)
G1444233 LOC106565035 non-coding downstream 86010 37000029 ~ 37002478 (+)
G1444198 LOC106565031 other upstream 50621 36857566 ~ 36861009 (+)
LOC110493174 LOC106582647 other upstream 353859 36492282 ~ 36557771 (+)
G1443844 NA other upstream 536256 36331235 ~ 36375374 (+)
LOC118940407 NA other upstream 670905 36234292 ~ 36242642 (+)
G1443251 NA other upstream 1159840 35746872 ~ 35751790 (+)
G1444933 NA other downstream 488178 37402197 ~ 37402492 (+)
chd6 NA other downstream 520756 37406926 ~ 37514061 (+)
rbl1 rbl1 other downstream 671861 37538220 ~ 37588797 (+)
G1446149 NA other downstream 1395110 38309129 ~ 38310864 (+)
pmepa1 pmepa1 other downstream 2429008 39342991 ~ 39426900 (+)

Expression


Co-expression Network