G1446874


Basic Information

Item Value
gene id G1446874
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 39081804 ~ 39083444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1656047
TACTTGAGAAATATCCAAGTGTCTTGGCTGTGTCTGTTTAATATCAAGATGGAAGTTCTGGCTTTTTCACCTGAACAAGACCATGTGCAAACTGAACAGGATTGGCAGAACAAAAAGTATTTGGGAAGATGGGGAACAGGTTGACATGCATAAATAACAGATGGAATGCTATTTTGACAGCAAGTAAGTAAGTGAACACTAGTTAGGGCTGCTATTTGACTTATCAAGCTCTATTTAGGAATGAGAAATGAGAAATGCTTTATTAGGGGTTCAGAACAAAGCTGTGAAACAGTTATTCTCTGAATTCTTCAGGTTTTTGTTTTTAGCATAGATTGGTAACTTTTCTCTCATTTGGAACACAAAAACTAGATGCCATGAGTAACTTGGTTAAAAAGATTGGCCTATAAGCCGTTATAAGCAGTCTCACGTAAACCCTCATATCCGTCGCCCCATTTGACAGGGAGATGTGAAACTTTGTATGTAGGTGTCTTTCCTCATGTTGAACAAATCTTCCGCAAGGACACAAGGTCCGTCAGGATAGATTTTTCTCCATCTTGGAAATCCTTTGAAAAACCTATTCTCATTAACCATAACCACATGTAGTATGTAGGCCAATCAATGGCACATGTTTTAACGTAGTTTGAGAAAAGCTAAGGGATTGGTCAAAAGATGGCTGAGTTTTGACAAATCCTAAATCTGATTTTACATGTCCATTTAAATCACTGTAAATCTACTCCACAGTGCCCTATCAATGTGAATACTTGCCATCGCTATCATGGATGTCCCTAAGATGAACCACACTTAATTACATTTTGAGATCTCAAAAAACAAGGAAACTACAACTACTAATTCTTTGCATATGTAATGCTAATGCTGAAAATCATCTGCTCTTCATCTTCTCTTTAATGGTTTTGAGAAAAGATTGTTGCTGCATTCATTTATTTTACAATCCCTTAAATGGCACACAGTTCTCAATGGTTTACTGTCGCTGCGGGTTTACTGGAGCTGGTTTACCCAGCAGCCAAATCAAATTCTCTGCATGGTATTGTGACGTTTTATTGATAACAACCTATTGTTTTCAGgcacattcatttattttattttgcttgTTTCATATGAAACTACAAAGTACTGGCGCATAGGCTTACTGTGATTTGATTGATGAACAGCAAGCTTGACATAGTTATAAATGGTGTCAAAGTTTCTCATATATCCTTGGTATTTGTAAATAATAAAACGTCCATAATATGTCCATGGTATCACATCGGGACAagtaaactgaagatctcgtttGTATTTTTGATATGAAGACCATCAGGACTTGCCAAACAGTGACGATAAAGTGAGTGAATCGTTACTAGCCTACCGAATCACATCGGTAAGAGAGCCGTTGATTTGGCTCCATAATTTGCATACTAGTAGGGTTTTTGGCGATTTAACTGATATCGTTTTCTCTCAACAGGTATGGAACCAGAAGTTAATTAACCATCTGCTCTGTTTATTTTAGACACATTTTTCCATTTGAAAAAGTACCCCTCacaca
>TU1656046
AGCTCTATTTAGGAATGAGAAATGAGAAATGCTTTATTAGGGGTTCAGAACAAAGCTGTGAAACAGTTATTCTCTGAATTCTTCAGGTTTTTGTTTTTAGCATAGATTGGTAACTTTTCTCTCATTTGGAACACAAAAACTAGATGCCATGAGTAACTTGGTTAAAAAGATTGGCCTATAAGCCGTTATAAGCAGTCTCACGTAAACCCTCATATCCGTCGCCCCATTTGACAGGGAGATGTGAAACTTTGTATGTAGGTGTCTTTCCTCATGTTGAACAAATCTTCCGCAAGGACACAAGGTCCGTCAGGATAGATTTTTCTCCATCTTGGAAATCCTTTGAAAAACCTATTCTCATTAACCATAACCACATGTAGTATGTAGGCCAATCAATGGCACATGTTTTAACGTAGTTTGAGAAAAGCTAAGGGATTGGTCAAAAGATGGCTGAGTTTTGACAAATCCTAAATCTGATTTTACATGTCCATTTAAATCACTGTAAATCTACTCCACAGTGCCCTATCAATGTGAATACTTGCCATCGCTATCATGGATGTCCCTAAGATGAACCACACTTAATTACATTTTGAGATCTCAAAAAACAAGGAAACTACAACTACTAATTCTTTGCATATGTAATGCTAATGCTGAAAATCATCTGCTCTTCATCTTCTCTTTAATGGTTTTGAGAAAAGATTGTTGCTGCATTCATTTATTTTACAATCCCTTAAATGGCACACAGTTCTCAATGGTTTACTGTCGCTGCGGGTTTACTGGAGCTGGTTTACCCAGCAGCCAAATCAAATTCTCTGCATGGTATTGTGACGTTTTATTGATAACAACCTATTGTTTTCAGgcacattcatttattttattttgcttgTTTCATATGAAACTACAAAGTACTGGCGCATAGGCTTACTGTGATTTGATTGATGAACAGCAAGCTTGACATAGTTATAAATGGTGTCAAAGTTTCTCATATATCCTTGGTATTTGTAAATAATAAAACGTCCATAATATGTCCATGGTATCACATCGGGACAagtaaactgaagatctcgtttGTATTTTTGATATGAAGACCATCAGGACTTGCCAAACAGTGACGATAAAGTGAGTGAATCGTTACTAGCCTACCGAATCACATCGGTAAGAGAGCCGTTGATTTGGCTCCATAATTTGCATACTAGTAGGGTTTTTGGCGATTTAACTGATATCGTTTTCTCTCAACAGGTATGGAACCAGAAGTTAATTAACCATCTGCTCTGTTTATTTTAGACACATTTTTCCATTTGAAAAAGTACCCCTCacacaattgtttttattttaaattgaaccttaaatgattttttttctagatAATTTGGACTATTTAATGAAATTctgttttaataaaatacataatttaaaGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1656047 False 1543 lncRNA 0.37 1 39081804 39083346
TU1656046 True 1415 lncRNA 0.35 1 39082030 39083444

Neighbor

gene id symbol gene type direction distance location
raly LOC106565059 coding upstream 343 38909389 ~ 39081461 (+)
romo1 romo1 coding upstream 404323 38675958 ~ 38677481 (+)
mtss1 LOC106565049 coding upstream 535021 38428173 ~ 38546783 (+)
osgn1 LOC106565048 coding upstream 675851 38390133 ~ 38405953 (+)
LOC110493179 pigu coding upstream 716442 38345608 ~ 38365362 (+)
asip1 asip coding downstream 95273 39178717 ~ 39183960 (+)
LOC110493876 NA coding downstream 136819 39220263 ~ 39225724 (+)
pmepa1 pmepa1 coding downstream 259547 39342991 ~ 39426900 (+)
ccndbp1 ccndbp1 coding downstream 417252 39500696 ~ 39521498 (+)
LOC110493884 LOC106565072 coding downstream 568420 39651864 ~ 39696026 (+)
G1446956 NA non-coding upstream 34473 39026261 ~ 39047331 (+)
G1446570 NA non-coding upstream 357452 38724062 ~ 38724352 (+)
G1446547 LOC106565051 non-coding upstream 379974 38688427 ~ 38701830 (+)
G1446991 NA non-coding downstream 3064 39086508 ~ 39086726 (+)
G1446994 NA non-coding downstream 5825 39089269 ~ 39089478 (+)
G1446992 NA non-coding downstream 6461 39089905 ~ 39091148 (+)
G1447017 NA non-coding downstream 39323 39122767 ~ 39122968 (+)
G1447480 NA non-coding downstream 346532 39429976 ~ 39434546 (+)
G1446149 NA other upstream 770940 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 1493077 37538220 ~ 37588797 (+)
chd6 NA other upstream 1641392 37406926 ~ 37514061 (+)
G1444933 NA other upstream 1679312 37402197 ~ 37402492 (+)
G1444198 LOC106565031 other upstream 2220795 36857566 ~ 36861009 (+)
G1447998 NA other downstream 716492 39799936 ~ 39800236 (+)
LOC110493893 cdh22 other downstream 1866098 40767465 ~ 41084819 (+)
LOC110493897 LOC106565282 other downstream 2558679 41641874 ~ 41706180 (+)
G1450387 NA other downstream 2709439 41792883 ~ 41890515 (+)

Expression


Co-expression Network