G1447563


Basic Information

Item Value
gene id G1447563
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 39606969 ~ 39607548 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1656761
aaatcttgaatgagtaggtgtgtccaaacttttgactggtactgtaagttttcaaacccctgagtcaatacattgtagaagcacctttagcTATgcttacagctgtgagtctttctgggtaagtctctatagagctttccacacctggattgtgtatcATTTGcccattcttttcaaaattcttcaagctctgtcaaattggttgttgattgttgctagacaaccattttcagatgTTGCCATAACTCTTctagtagatttaagtcaaaactgtaactcggccactcaggaacatgccctggcttcttggtaagcaacttttGTGTaggtttggccttgtgttttaggttattgtcctgctgaaaggtgatttATTCTCCCAAtgtttggtggaaagcagactgaaccaggttttcctctaggatttttgccTGTACTCAGctccattttctttattttttatcttgaaaaactccccagtacttaacgattacaagcataccataacatgatgcaggcaccactatgcttgaaaatatggagagtggtattgagtaatgtattgtattgtatttgcccc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1656761 True 580 lncRNA 0.39 1 39606969 39607548

Neighbor

gene id symbol gene type direction distance location
ccndbp1 ccndbp1 coding upstream 85471 39500696 ~ 39521498 (+)
pmepa1 pmepa1 coding upstream 187158 39342991 ~ 39426900 (+)
LOC110493876 NA coding upstream 381245 39220263 ~ 39225724 (+)
asip1 asip coding upstream 423009 39178717 ~ 39183960 (+)
raly LOC106565059 coding upstream 525508 38909389 ~ 39081461 (+)
LOC110493884 LOC106565072 coding downstream 44316 39651864 ~ 39696026 (+)
LOC110493887 LOC106565076 coding downstream 298725 39906273 ~ 39917797 (+)
LOC110493888 LOC106565077 coding downstream 341078 39948626 ~ 40269835 (+)
LOC110493889 LOC106565080 coding downstream 705328 40312876 ~ 40367740 (+)
LOC118940425 dnttip1 coding downstream 760209 40367757 ~ 40378949 (+)
G1447480 NA non-coding upstream 172423 39429976 ~ 39434546 (+)
G1447017 NA non-coding upstream 484001 39122767 ~ 39122968 (+)
G1446992 NA non-coding upstream 515821 39089905 ~ 39091148 (+)
G1446994 NA non-coding upstream 517491 39089269 ~ 39089478 (+)
G1446991 NA non-coding upstream 520243 39086508 ~ 39086726 (+)
G1447558 NA non-coding downstream 89670 39697218 ~ 39717880 (+)
G1447648 NA non-coding downstream 113249 39720797 ~ 39767245 (+)
G1448007 NA non-coding downstream 198396 39805944 ~ 39806156 (+)
G1448130 NA non-coding downstream 296712 39904260 ~ 39904461 (+)
G1448150 NA non-coding downstream 333377 39940925 ~ 39941301 (+)
G1446149 NA other upstream 1296105 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 2018242 37538220 ~ 37588797 (+)
chd6 NA other upstream 2166557 37406926 ~ 37514061 (+)
G1444933 NA other upstream 2204477 37402197 ~ 37402492 (+)
G1447998 NA other downstream 192388 39799936 ~ 39800236 (+)
LOC110493893 cdh22 other downstream 1341994 40767465 ~ 41084819 (+)
LOC110493897 LOC106565282 other downstream 2034575 41641874 ~ 41706180 (+)
G1450387 NA other downstream 2185335 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 3721038 43328586 ~ 43459832 (+)

Expression


Co-expression Network