G1448327


Basic Information

Item Value
gene id G1448327
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 40278165 ~ 40278684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1657585
cctttatttaaccaggtaggctagttgagaacaatttctcatttgcaactgcgacctggccaagataaagcatagcagtgtgaacagacaacacagagttacacatggagtaaacaattaacaagtcaataacacagtagaaaaaaaagagagtctatatacattgtgtgcaaaagccatgaggaggtaggcgaataattacaattttgcagattaacactggagtgataaatgatcagatggtcatgtacaggtagtgtggtgtgtaaaagagcagaaaagtaaataaataaaaacagtatggggatgaggtaggtcaaattgggtgggctatttaccaatagactatgtacagctgcagcgatcagatagcagatgtttgaaattggtgagggagataaaagtctccaacttcagcgatttttgcaattcgttccagtcacaggcagcagagaactggaatgaaaggcggccaaatgaggtgttggctttagggatgatcagtgagatacacctgttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1657585 True 520 lncRNA 0.40 1 40278165 40278684

Neighbor

gene id symbol gene type direction distance location
LOC110493888 LOC106565077 coding upstream 8330 39948626 ~ 40269835 (+)
LOC110493887 LOC106565076 coding upstream 360368 39906273 ~ 39917797 (+)
LOC110493884 LOC106565072 coding upstream 582139 39651864 ~ 39696026 (+)
ccndbp1 ccndbp1 coding upstream 756667 39500696 ~ 39521498 (+)
pmepa1 pmepa1 coding upstream 858354 39342991 ~ 39426900 (+)
LOC110493889 LOC106565080 coding downstream 34192 40312876 ~ 40367740 (+)
LOC118940425 dnttip1 coding downstream 89073 40367757 ~ 40378949 (+)
LOC118940426 LOC106565291 coding downstream 104501 40383185 ~ 40385420 (+)
LOC110493184 LOC106565288 coding downstream 169843 40448527 ~ 40474689 (+)
LOC110493893 cdh22 coding downstream 488781 40767465 ~ 41084819 (+)
G1448325 NA non-coding upstream 1027 40276787 ~ 40277138 (+)
G1448324 NA non-coding upstream 1590 40276308 ~ 40276575 (+)
G1448318 NA non-coding upstream 3480 40273860 ~ 40274685 (+)
G1448174 NA non-coding upstream 290156 39987534 ~ 39988009 (+)
G1448150 NA non-coding upstream 336864 39940925 ~ 39941301 (+)
G1448328 NA non-coding downstream 558 40279242 ~ 40279452 (+)
G1448329 NA non-coding downstream 824 40279508 ~ 40279848 (+)
G1448330 NA non-coding downstream 1260 40279944 ~ 40280161 (+)
G1448349 NA non-coding downstream 24272 40302956 ~ 40303304 (+)
G1448357 NA non-coding downstream 38142 40316826 ~ 40317353 (+)
G1447998 NA other upstream 477929 39799936 ~ 39800236 (+)
G1446149 NA other upstream 1967301 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 2689438 37538220 ~ 37588797 (+)
chd6 NA other upstream 2837753 37406926 ~ 37514061 (+)
LOC110493897 LOC106565282 other downstream 1363439 41641874 ~ 41706180 (+)
G1450387 NA other downstream 1514199 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 3049902 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 3050415 43329099 ~ 43409816 (+)

Expression


Co-expression Network