G1450384


Basic Information

Item Value
gene id G1450384
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 41756729 ~ 41759882 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1659718
GTTTTATTTCAGAATTGTCTAAATTAATTTTGACATTAACATCAAAGATCCTTCCTCTTCACATTCACgtaagaaaaaaataaatagcaTCGAACCATAAACTCCCTTTTATTAAAAGGTTAGAGCTTTTACAAAGAAAAATACAGTGAATACACTATCAACATGATTTACAACCCAATCATTAAAAGTTAAAGTATTAGTTAACACCTTCATATATCTATACATTTTATTCCACTATGATCTGGGAACAGcggcaaaaaaaaaagaacaagtGGTTAATCAGCCGAGTAAGGTGCTATCGCTTGTTATTTGTTAAATCTTTCCATTGTTTTCTACATTTAATTCACAAATTATGATTTAAATAACAGCAATCTCTTCCCAAGGCAGTGCACTACGAAGTGGTGAGCCAGAATGGGTGCGTGTGGCAAAGGAGTCATGAGTAATGCAGTGAAGAAATGGGACAGAATCACCCTGACAAGTCACCCAGTTATATAAAACGGTTTcagagtcaagactgagaccagCCATACAATAACATGGcgattttaaaacattttaaaacaaaaaaatgtgtttcttattggacaagctcAAGGAGTACATCCGTTTCAAAACGTTTTCAAAGTACTGAACACGACCCAGATGCTCATAGCCAAGACAGCCTGGAGTTAACATACAATATTTGCGCCAAATATGTAAGTTGGTGTCCAGTGCATTAAAATAACACACTCAGGACAAGGTTGTGTGTGTCACTTGCATGTTTGATTTGACTGCAAATACACGTGACCTAAACATTTCATGAGTGAAAGCTATATTTCATCTAACTTTATTACACTTCCACTGTTCCTGTGAAGAAATCCTACCAAGATGCCTGTTAGAGATATGCCTGAGAAGCAGAGGACACAAAAAAGGTCAGAAGTGGCAGATCTCATTCAATGCCAATCAACAGGCTAGTGTTTATCAGGTCACGAGACAGAAAAGGTTTTGCAAAATTTTGCAATGAGAAACGAAAATGAAGTCCaGGTGCCTAACACAACCTGTTTGTTTTCTGGCAAGCCtttttccctcctcccccctcctatcAGTCTGTCTGAAACTAAGCTTAGAACTTATATTGACTTGACTCTGGGCTTGTCTGTTTGGTGTCTAGATTTTTAAGATACAATGTTGCCTATTACCAAACATATTTTTCCTCAAAACACAGTGCTGACCATTTGCGGTTGTGCATGGACATGGTTCATATTTGACTTTTGATTCACAGTCGTTTTGCTACGCTCACTCGAGCGGTTTTAAAATATAGCGTTTTTTTATTTAGCATCAAACCTTTAACAAAATATCTAGAATGACAAAACTGAACCCTATAAAACTAGGGTCGCATTGGTGTTGAGTTAATTACGTTAACACCTACTTGTTATTGTAATTCTTACCCTCTTATTCACTTAacatgaatatacagtatatttcttAGGGCTATGGGCCTGGGacatgactatatactgtatattcggATTCATTCAAACTTAGCTCTACTTAATAAGTACGCCATTTAAAAAAGTTCCCTGCATCATACTGTATATGGATGTATACACGCCGAGCATTCATTAAAATCAACTAGTTTGGACACTTAATCGTTTGATCTTTAATCACGGAGTTATTAGTTATTCTCTATATGACAAAAAAAAGGAAAGTGATACCTTTCAGAAGGAGTGATTCTCACAAGCCGGTGTCTTAGTTCACTTCCTAATTATCTCATTCTTAAAATGTACTCCTAAAATATACTCTTCACCTAGCCGCTGTCCTTGACACGCTGTGGACACTCCCACGTCATTAGTAACTCACTCGGTTtgccataaaaaataaaaacaaaagttATTAGCGTATACATTTGAACCCCTATTCAGCTCCAATCAGTACTGTGCTGAGCCTGAATTTTTTGGGAAAGAAAAGGTCCGTCGAAATGACAACAAACCAGGGTCGACTTCAGTAGGCACAAAAACAAACAGTTTCAAACGGAAAACAAAAATGGCTTGAGCACTAAGACAAAAACGTTGTCACTTTTCTTCCATTTGaggcctaatgaatacgaccctgttTTAATACAATGATTCCAGGCTATTAAAAAAAGCATTCTCCATATTCTGAGCTGAAATcaatacagagacttgattaaaAACGGACTTATAAACAAAAACTTTGGATTGCAGTAAATAATTAATGTCTGGTTTATCTATATTAAGGGCATAAACAGCTGACTAGAAAACTATGCTATTGCACGTAAAAAATATAGCTTTTCATCTTTGCAACATTCACAAATACCTTTTGCTACAACACGGTGGAGTGCCAGCAAAGTAGATGCTTTAAGTGTCAATATTTCTTTCAGAAAGAGACTAAATCAGAAAGAGGTTAAATCAAGTAATACTGTAAATCTCTATATGTCAAATTGATGAGAGGTCAATGTCTTTTTGGAAGAATCCGCAGCACTCGATCCTAACattaattcatccatccattcattcactTAACAAATCAGAGctcagggagaggaagggaagaaatgACGGCTGACATTGTACTGCATATTGAATAGTCACCGTGATTATTAACTACTGTGGTGCGGTGTGgagatgagacagagacagacgtgAGTTGGGGAGGGAACATCCCCTCTTCCTCTCAATCCCTACCTCTTTCTTCCTCCATTCCCGGACACGTGGGCTGAATAAGGCAAGCTGCAACAGGGTCACACACAATTTAGGAGGTGAAAGGTAAATCAGTCAGTATTTTAAGGGTCATCACCATGGAGACGGACTGACTCCACCTTAGGTGCAGGGGGTGTGTCTGCAATGGGGCTCGGGACTGCAGAAAGGAGTGTTTGTCAGTTTCTGCCATTACAAAGAGAGCCAGGACCTGGGGAAAAGTGCTGTTGCCTAAAACCTAGACAGAACAAAGTGCTGGAGAGCGTAACGTCGTGTGGAAAACGGCTCTTCGTGGCGGCCATTTTGGCGTCCCCATGTTACTACTCCTGTCCGAAGCCCTCAGTTTCCTCAATGGCAAACATCAGTTTTTCCTTCAGCTGCTCGTAGCTCTTGTAAGGGGGCAGGTCCAGTCGATTAAAG

Function

NR:

description
hypothetical protein cypCar_00048951, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1659718 True 3116 lncRNA 0.39 2 41756729 41759882

Neighbor

gene id symbol gene type direction distance location
LOC110493897 LOC106565282 coding upstream 50549 41641874 ~ 41706180 (+)
LOC110493894 LOC106565283 coding upstream 209015 41530173 ~ 41547714 (+)
LOC110493893 cdh22 coding upstream 671910 40767465 ~ 41084819 (+)
LOC110493184 LOC106565288 coding upstream 1282040 40448527 ~ 40474689 (+)
LOC118940426 LOC106565291 coding upstream 1371309 40383185 ~ 40385420 (+)
LOC110493901 LOC106565279 coding downstream 62480 41822362 ~ 41887681 (+)
LOC110493904 LOC106565276 coding downstream 270108 42029990 ~ 42108742 (+)
LOC110493907 LOC106565273 coding downstream 569683 42329565 ~ 42407845 (+)
LOC110493908 LOC106565271 coding downstream 675446 42435328 ~ 42516956 (+)
LOC110493909 arfrp coding downstream 768867 42528749 ~ 42532546 (+)
G1450363 LOC106565281 non-coding upstream 26545 41729424 ~ 41730184 (+)
G1450093 NA non-coding upstream 346872 41409621 ~ 41409857 (+)
G1450071 NA non-coding upstream 366515 41390006 ~ 41390214 (+)
G1449866 NA non-coding upstream 518585 41237833 ~ 41238144 (+)
G1449860 NA non-coding upstream 524639 41231885 ~ 41232090 (+)
G1450421 NA non-coding downstream 37194 41797076 ~ 41798952 (+)
G1450425 NA non-coding downstream 43967 41803849 ~ 41804516 (+)
G1450385 NA non-coding downstream 128189 41888071 ~ 41889157 (+)
G1450462 NA non-coding downstream 130763 41890645 ~ 41894245 (+)
G1450473 NA non-coding downstream 157107 41916989 ~ 41917232 (+)
G1447998 NA other upstream 1956493 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 2329829 39342991 ~ 39426900 (+)
G1446149 NA other upstream 3445865 38309129 ~ 38310864 (+)
G1450387 NA other downstream 33001 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 1568704 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 1569217 43329099 ~ 43409816 (+)
G1452359 NA other downstream 1722378 43482260 ~ 43483693 (+)
G1452362 NA other downstream 1731292 43491174 ~ 43492068 (+)

Expression


Co-expression Network