G1450462


Basic Information

Item Value
gene id G1450462
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 41890645 ~ 41894245 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1659807
tgtcatagttgaagtgtacctatgatgaaaattacaggcctctctcatctttataagtgggaaaacttgcacaattggtggctgactaaatacttttttgccccactgtatatcgtaGTAATACATTTTCCCCAAATTTTTCCATAGTTGAATTTATTTCATTTggaagataataataataagagaatcAGGCATATTCATGTGTATATGGATGTGTTGTCATTGTGCTTTTGATGTTAATTAAGTATATTTTTCATGTAGAAATTCAACATATTAATTTTAATAAAAGTCAATGGCCAGTCAGTCTACTCAACTGTTTTGAATTTCTACTTTAGGTTTACAGGTACACTTATTAAAAAATGTTATATCTAGAACCTACAAGTGTTCTTCAAAGTGTTCTCCCatggggacagcagaagaaccctttt
>TU1659802
cttgcacaattggtggctgactaaatacttttttgccccactgtatatcgtaGTAATACATTTTCCCCAAATTTTTCCATAGTTGAATTTATTTCATTTggaagataataataataagagaatcAGGCATATTCATGTGTATATGGATGTGTTGTCATTGTGCTTTTGATGTTAATTAAGTATATTTTTCATGTAGAAATTCAACATATTAATTTTAATAAAAGTCAATGGCCAGTCAGT
>TU1659803
CATTTCAAGAGCATTTGGCAGGCTCGCATCGAGCACAGCACTTTCTTTCCATATTGTCAAGACTTCTTGCCAAGAAAAACAATTAATTTTAACCTCATGAATAACGGTTTGTAAGACACGGTGATATGACATAAAAAGAAGCAACTCCCTTTGCATAGAAATGAAGATGGCAGGAACAAGCCCTCGTCTCTCCTTGACAGTGAAATTAGTTTGAGTGTGTCGCTGTTGAAATCATTGTCAAGCACTTCACGCTCAGATGTGGTGTGGTCATTGTGTCGTTTGTATGGTATATGGAGAGAGGCTATTGGAGATGTATTGAGGTCAAACCTGTAGGGCCGGTTTTACTGcatgttcaatggagattctccattcaaagtgctttttagtccatGACTAGTCTTAATCTGTATCAGGGAAACCGGCCCAAAGAAATACAATACAAATAGGGACACGTTTCcgggacacagattaagcctggtcttCAACTAAAAAGCAAACTCAATGGAGAATATTGAAAACGCTTTTTAGTCAAGGATAAGGTTTAATATGTGTCCAGGAAACCGCCCCATAGTTCTGTTAATTCTGGTGGCATCATACACTTtgtatctgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggcgtgagttgggtgggcagtctgtttgtttttctatgatttgggtatttctatgtttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggtgtcactgtgtgtttgggTGATtgctcctgtctctgtgtttacaccagataggactgttttgcgttttcacatttcttgtttttgttagtttgttcatgtgaagtgatttattaaaacatgaataaccaccacgctgcgctttggtccgcc
>TU1659805
GGTTTTACTGcatgttcaatggagattctccattcaaagtgctttttagtccatGACTAGTCTTAATCTGTATCAGGGAAACCGGCCCAAAGAAATACAATACAAATAGGGACACGTTTCcgggacacagattaagcctggtcttCAACTAAAAAGCAAACTCAATGGAGAATATTGAAAACGCTTTTTAGTCAAGGATAAGGTTTAATATGTGTCCAGGAAACCGCCCCATAGTTCTGTTAATTCTGGTGGCATCATACACTTtgtatctgtcacgttctgacctttatttcctttgttttgtcattatttagtatggtcagggcgtgagttgggtgggcagtctgtttgtttttctatgatttgggtatttctatgtttcggcctagtatggttctcaatcagaggcaggtgtcattagttgtctctgattgagaatcatacttaggtagcctgggtgtcactgtgtgtttgggTGATtgctcctgtctctgtgtttacaccagataggactgttttgcgttttcacatttcttgtttttgttagtttgttcatgtgaagtgatttattaaaacatgaataaccaccacgctgcgctttggtccgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1659807 False 428 lncRNA 0.32 1 41890645 41891072
TU1659802 False 240 lncRNA 0.29 1 41890710 41890949
TU1659803 False 946 lncRNA 0.41 2 41891188 41894245
TU1659805 True 609 lncRNA 0.40 2 41891525 41894245

Neighbor

gene id symbol gene type direction distance location
LOC110493901 LOC106565279 coding upstream 2964 41822362 ~ 41887681 (+)
LOC110493897 LOC106565282 coding upstream 184465 41641874 ~ 41706180 (+)
LOC110493894 LOC106565283 coding upstream 342931 41530173 ~ 41547714 (+)
LOC110493893 cdh22 coding upstream 805826 40767465 ~ 41084819 (+)
LOC110493184 LOC106565288 coding upstream 1415956 40448527 ~ 40474689 (+)
LOC110493904 LOC106565276 coding downstream 135745 42029990 ~ 42108742 (+)
LOC110493907 LOC106565273 coding downstream 435320 42329565 ~ 42407845 (+)
LOC110493908 LOC106565271 coding downstream 541083 42435328 ~ 42516956 (+)
LOC110493909 arfrp coding downstream 634504 42528749 ~ 42532546 (+)
LOC110493911 LOC106565269 coding downstream 705475 42599720 ~ 42632365 (+)
G1450385 NA non-coding upstream 1488 41888071 ~ 41889157 (+)
G1450425 NA non-coding upstream 86129 41803849 ~ 41804516 (+)
G1450421 NA non-coding upstream 91693 41797076 ~ 41798952 (+)
G1450384 NA non-coding upstream 130763 41756729 ~ 41759882 (+)
G1450363 LOC106565281 non-coding upstream 160461 41729424 ~ 41730184 (+)
G1450473 NA non-coding downstream 22744 41916989 ~ 41917232 (+)
G1450474 NA non-coding downstream 23251 41917496 ~ 41917805 (+)
G1450487 NA non-coding downstream 51220 41945465 ~ 41945755 (+)
G1450488 NA non-coding downstream 52044 41946289 ~ 41946496 (+)
G1450489 NA non-coding downstream 52449 41946694 ~ 41946947 (+)
G1450387 NA other upstream 130 41792883 ~ 41890515 (+)
G1447998 NA other upstream 2090409 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 2463745 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 1434341 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 1434854 43329099 ~ 43409816 (+)
G1452359 NA other downstream 1588015 43482260 ~ 43483693 (+)
G1452362 NA other downstream 1596929 43491174 ~ 43492068 (+)
G1452369 NA other downstream 1647419 43508719 ~ 43565770 (+)

Expression


Co-expression Network