G1451551 (LOC106565270)


Basic Information

Item Value
gene id G1451551
gene name LOC106565270
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42563945 ~ 42588386 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1660947
AGGTATCACCAACTTTATTATAGTTCATCAGACTTTATATTCCAGCAACAGCAGCCAGTTAACCTTTTATTAAAGGTGAGATACTGTTGAGTTATGCACACAGAGTCGCTGTATGCAATGAATCTAAGTTAAATGAATggccaacagtgtgtgtgtatgtactgtgtaaGCATGGTGGCCTGGTGGACTCATCTTAGACAAAGAGAATAAAAACAGAAGTTGGCACGGTGTCAAGGTTACTTAATACATGGCGACAACCAACCAAGTCAAGCACCTGCATGAAAGGAATGTGTCCTAGCAGAACCCTACTGAAGCTGAGCAGTCTTATCCCAAATAACACTGCTATAGGGAAACCAGGCACGAGttgcctacagatgtaggatcttaaattgagccagtttgctacagcagaaaatgatcctgcagcaacaagaaCTGTGaagtattatgtggattataatgaatggacatttttgtagggtttGTTACATTTACTCATTAGagtaaatcaagtctgacatttttaagtggaaattacaaactttagaagcctttttaaaccttaaatacactacaagtttgcatttcctgctaaGCAGGAAaattcctgcagcaacaggatgaCCAAATTAAGATATATGCTGCTAGAAGGGTAAGTGTGTCTGGCAATACATTCAGTGCTGTGTCAGCATTTGATGCCTCTACATTACATGCCAACGTTCACATCATAATCCAATAACAAAATCAAATAAACACTTTGCATATAATTTGCATTAAAACAGTTCTGTCACATTGCTCTGTATCTCACTGCAAACAAACTATGGCACTCTGTAGTGGAGTCATCTTGTTACTAAATGTAGTCCCCTAAAGTGACAACAGAATTGAGTGATTCTCAGAAATAAACATTCAGTAGCTAGGAAATGAAACCTAAAAGAGACCGGAACCCACTCTTAAAGCAGTTTAAACGTATTAATGACGTATACGGCAAACTGAATACTGAACTTTATTGAACTGAAGCCTAAATGCGACTGTGCTCCATTTTATACAGTCACTTGATTGACGTTGCATGCTTGATTGAAGATGGCTGCACAAACTGACAATGGGTGTGACTATATATGATGAATGACCAGGTTATAGTGTTTGCCTATAGAGTGTGCTGAATATTGTATATTATCAGATACCCCTTTTTACACATGGTCCAAGCAAGGGCAACACTTGAATCAATTTAGCTTGGCTCTGCTCCCCTGTTATACAGTACCTTATGCAAtagatggagggattgtgtaaAGACCTCAAGCTCATTTTACAAGAGAAAGACATTTTGGCAATATGTGTAACAGGTTTGCTCACAGTACAGATGCAGCATAATCATGACTTCCTATGAGAATTAAGCGTAACTATTGAGCTATGTTTTTGGATCAATAAGGGAAATTCATCATTATGATCTAACAGTAGCTTCTTAGgtctgacacacacagagggccCGACTTACCAAGCATTTGCACAAGTGCAAACATTTACTGATTATTTTTCCAGACAGAACCAAACACAACGACTTAAATGTAaaattaaatgtaaaataaagGTAAGAGAAGGAGTAGGTTTCCTAAGATAAAGAAGAAATGTTtcaaatgttttcattttgttCCCTTGTATGAACTCACAGGTGCAGTCTTAAGAAAGGTGCAAATGTTTAGTAAATCTGACCCTTGACCTTGGGCCTTACTTCAGCTCTACCCGTGTTCAATATCAatattatttaaaataaataaattgagaGATGAGAAACAATCGGTGTAAATTGTTGTTGAATTATTAGCTTGTGAAACCAGTGTATATTGAACAATGCAAGAGACTTTCAGACATCGAGATTTAAAAAAGTAGCATATCTTTCCAACCAAAACCAGACGAGAATCTCTTGACAAAACCGTAGAAAATATCTTCAACCAGAGAGGTCAGCTTGGAGTTCCTTGTTTCTACGGAGCCTCTGCTTGAGCGCATTCAGGTGGGCCTCGCGGTTCTCTTTGTTGACCTCCATCTTGTAGTTGAGTTTCTCCTCTGCCATCTTGCTGAAGTTGTTGTTCTCCTCCAGGGCCTTGTGGAGCACCTCTCGCTCATGCTCCCGCTTCTCAGCCAGCTGCTTCAGGAGCAGGGCCTCCtgagactgcagagagagaagagtgagagagatgGATGCTGCCGGATGGAGGAGAGGCAAGaatgtgagagaggaggaggagagagatggctcTGTGTGTATATCTGTCTCCAAGTGGTGCAATGCACAAGCCTCTCTGCGGTGTTGCGTGGACAATGACCAGCCCGCTCGACTCGATAGGGGCTGCTGCAACCTgccagagacaaggagaggggg

Function

NR:

description
stathmin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1660947 True 2374 lncRNA 0.41 3 42563945 42588386
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493909 arfrp coding upstream 31399 42528749 ~ 42532546 (+)
LOC110493908 LOC106565271 coding upstream 46989 42435328 ~ 42516956 (+)
LOC110493907 LOC106565273 coding upstream 156100 42329565 ~ 42407845 (+)
LOC110493904 LOC106565276 coding upstream 455203 42029990 ~ 42108742 (+)
LOC110493901 LOC106565279 coding upstream 676264 41822362 ~ 41887681 (+)
LOC110493911 LOC106565269 coding downstream 11334 42599720 ~ 42632365 (+)
LOC110493912 LOC106565266 coding downstream 151992 42740378 ~ 42762109 (+)
LOC110493915 LOC106565264 coding downstream 181919 42770305 ~ 42776295 (+)
LOC110493924 LOC106591969 coding downstream 362142 42950528 ~ 42952198 (+)
LOC110493836 LOC106565017 coding downstream 671780 43260166 ~ 43270260 (+)
G1451534 NA non-coding upstream 21626 42542089 ~ 42542319 (+)
G1451210 NA non-coding upstream 138080 42425633 ~ 42425865 (+)
G1451201 NA non-coding upstream 148690 42414928 ~ 42415255 (+)
G1451200 NA non-coding upstream 149659 42414076 ~ 42414286 (+)
G1451179 NA non-coding upstream 152612 42410730 ~ 42411333 (+)
G1451562 NA non-coding downstream 3330 42591716 ~ 42591935 (+)
G1451549 NA non-coding downstream 44282 42632668 ~ 42636308 (+)
G1451578 NA non-coding downstream 48837 42637223 ~ 42697720 (+)
G1451606 NA non-coding downstream 80278 42668664 ~ 42669251 (+)
G1451776 NA non-coding downstream 135625 42724011 ~ 42724215 (+)
G1450387 NA other upstream 673430 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 870227 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 1595879 40767465 ~ 41084819 (+)
G1447998 NA other upstream 2763709 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3137045 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 740200 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 740713 43329099 ~ 43409816 (+)
G1452359 NA other downstream 893874 43482260 ~ 43483693 (+)
G1452362 NA other downstream 902788 43491174 ~ 43492068 (+)
G1452369 NA other downstream 953278 43508719 ~ 43565770 (+)

Expression

G1451551(LOC106565270) Expression in all Baseline Samples

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G1451551(LOC106565270) Expression in each Bioproject

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G1451551(LOC106565270) Expression in each Sample
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Co-expression Network