G1451549


Basic Information

Item Value
gene id G1451549
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42632668 ~ 42636308 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1660944
tggcacagctggcgctgcagtacagcacccttaaccactgcgccacccaggaggccctcaCTGTCATTTTTAAGTGACCTTTAAATTATCTGTCAATTGTATTAGTGTGTATATTTTGTATTGCTAACTATACTGTTTGTtaatatatacactgtatacatacagttgaagtcagaagtttacatacacctacatACAACATTTaaaaactcagcttttcacaatttcTGAAATGTAACCATAataaaaattcactgtcttagggtagttaggatcaccactttattttaagaatgtgaaatgtcagaataatagtagagacaatgatttctttcagcttttatttcattcatttattcccagtggttcagaagtttacaggcactcaattagtatttggtagcattgcctttaaattgtttaacttgggtcaaatgttcctggtagccttccacaagcttcccacaataagttgggtgaattttggcccattcctcctgacagagctggtgtaactgagtcaggtttgtaggccttcttgctcgcacacgcttcttcagttctgcccacaaattgtctataggattgaagtcgggactttgtgatggccactccaataccttgacattgttgtccttaagccattttgccacaactttggaagtatgcttggggtcattgttaatttggaagacccatttgcaaccaaactttaacttcctgactgatgtcttgagatgtttcttcaatatatccacatcattttctttcctcatgatgccatctattttgtgaagtgcaccagtccctcctgcagcaaagcacccccacaacatgatgctgccacccccgtgctgccatctccccctttttcctccaaacataacaatggtcattatttttgtttcatcagaccagaggacatttctccaaaaagtatgatctttgccccccatgtgcagtttcaaaccgtagtctagcttttttatggcgatttaGGAGCAGTGCtaacttccttgctgagcagccgttcaggttatgtcgatataggactcgttttactgtggatatagatactttgtacctgtttcctccaggatcttcacaaggtcctttgctgttgttctgggattgatttgcactttccgcaccaaaagtacgttcatctctaggagacagaatgcgtatGACGGCTGtctggtcccatgttgtttatacttgcatactattgtttgtacagatgaacgtgataccttcaggcatttggaaattactcccaaggatgaaccagacttgtggaggtctacattttttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaaagaggtagtgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaatgatggcaattagcctatcagaagcttctgaagccatgacatcgttttatggaatttcccaagctgttaaaaggcacagtcaacttagtgtatgttagcttctgacccactggaattgtgataattgaattataagtgaaataatctgtttgtaaacaattgttggaaaaattacttgtgtcatgcacaaagtaggtgtcgtaaccgacttgccaaaactgtagtttgtcatggttgaaaaatgagttttaacgactccaacctaagtgtgttaacttccgaattcaactgtatatgctaCCCCGACTTTCTCTGTTAACTATTTCAATCATGTTAAATACACTacatgctcgtcgaacatctcattccaagatCATGGGCGttaatgtggagttggtccccacattgctactataacagcaatgagacttgctgaaaccggaaagggcctttcccaaacttttgccacaaagtcggaagcacagaatcgtctagaatgtcattgcccCAGACCATAATtccccctccaccaaactttaaagttgCAGTATGCATTGAGGCATATAGTGTTCCCCTGGCATCAgctaaacccagattcgtccatcggactgccagatggtgaagcgtgatccatcactccagagaacactccagagtccaatggtggcgagctttgcaccactccagccaactcttgggattgcgcatggtgatcttagtcttgtgtACGGCTCCTCGGCCATGGaaaacatttcatgaagcttacgacgaacagttattgtgctgacgttggttCCAGAGGCAGTTGGGAACTCAGTAATGAGTAtagcaactgaggacagattagtttttacacgctacgcagttcagcagccctgttctgtgagtttctgtggcctaccacttggtggctgagcctttgttgctcctagacagttgcacttcacaataacagcacttacagttgactggggaagctctagaagggcagaaatttgatgaactgacttattggaaaggtggcaccctatgacggtgccacgttgaacgtCACTGAGTTGTTCAGTTAGGCCATTATattgctaatgtttgtctatggagattacatggccgTGTGTTAAATTGTATTTACCCATCAGAAATGGTTGTgggtgaaatagccaaatccactcatttgaaagagTGTCCACTTACTCTTGTCCATGTAGTGTATTAGCTACTATCAGTATCGACCTAAAGCAGGCCTAAATAACCACACATTATCATTGCATTTAATTACACTGTTTCATTTACCttaatttgcttcctctgtaaacacCATCACAGCCATGTGGGTGTTCctgaggatcattagtaacagttGATAACATAGAAAACACGGACATGCAAGCTAATTAAATCTATATGGCGCGGAGCGCAGACGAAGCCATAACAGTTTGAAGCTGATAGTTAGTGCAGGCAATAGACGAGAGTATAGCCAACTATTGTACACTATTATAATTCTATGTACAGTAATCTTCTAACATCACCATGAGTTGAAAACTGAGTATGGCAATTTTCCCAGTGAATCTGTAttgtatttttgattcatcaatatattttgtgtggtaaggctctccaaacctgttttttaattaataaataaaagataaatgttatttgtcacgccctgatctgtttcacctgtccttgtgattgtctccaccccctccaggtgtcacccatcttccccattatcccctgtgcatttatacctaTGTTCTCTTTTTGTcggttgccagttcatcttgtttgtcaagtcaaccagcatttttgtaTCAGCTTCTGCTTTTgccgtctctctttctcatcctcctggttttgaccattgcctgttctgaccctgagcccgcctgGCCAATCTGCCTATCCCTGATcatgcctgccatcctgtacctttgccccacctctggattaccaacctctgcctgacctgaccctgagcctgcctactgttctgtacctttgcc

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1660944 True 3437 lncRNA 0.42 2 42632668 42636308

Neighbor

gene id symbol gene type direction distance location
LOC110493911 LOC106565269 coding upstream 303 42599720 ~ 42632365 (+)
LOC110493909 arfrp coding upstream 100122 42528749 ~ 42532546 (+)
LOC110493908 LOC106565271 coding upstream 115712 42435328 ~ 42516956 (+)
LOC110493907 LOC106565273 coding upstream 224823 42329565 ~ 42407845 (+)
LOC110493904 LOC106565276 coding upstream 523926 42029990 ~ 42108742 (+)
LOC110493912 LOC106565266 coding downstream 104070 42740378 ~ 42762109 (+)
LOC110493915 LOC106565264 coding downstream 133997 42770305 ~ 42776295 (+)
LOC110493924 LOC106591969 coding downstream 314220 42950528 ~ 42952198 (+)
LOC110493836 LOC106565017 coding downstream 623858 43260166 ~ 43270260 (+)
LOC118940459 NA coding downstream 683489 43319797 ~ 43330019 (+)
G1451562 NA non-coding upstream 40733 42591716 ~ 42591935 (+)
G1451551 LOC106565270 non-coding upstream 44282 42563945 ~ 42588386 (+)
G1451534 NA non-coding upstream 90349 42542089 ~ 42542319 (+)
G1451210 NA non-coding upstream 206803 42425633 ~ 42425865 (+)
G1451201 NA non-coding upstream 217413 42414928 ~ 42415255 (+)
G1451578 NA non-coding downstream 915 42637223 ~ 42697720 (+)
G1451606 NA non-coding downstream 32356 42668664 ~ 42669251 (+)
G1451776 NA non-coding downstream 87703 42724011 ~ 42724215 (+)
G1451777 NA non-coding downstream 87911 42724219 ~ 42724456 (+)
G1451784 NA non-coding downstream 93294 42729602 ~ 42729802 (+)
G1450387 NA other upstream 742153 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 938950 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 1664602 40767465 ~ 41084819 (+)
G1447998 NA other upstream 2832432 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3205768 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 692278 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 692791 43329099 ~ 43409816 (+)
G1452359 NA other downstream 845952 43482260 ~ 43483693 (+)
G1452362 NA other downstream 854866 43491174 ~ 43492068 (+)
G1452369 NA other downstream 905356 43508719 ~ 43565770 (+)

Expression


Co-expression Network