G1451817 (LOC106565263)


Basic Information

Item Value
gene id G1451817
gene name LOC106565263
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42789636 ~ 42790325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1661226
tcattagtccaaacagttgaaAATTAGAGTTTACTGGATAAATTCAGGTAGTTCACTCCCCGTTTAGTTTGCTTCCATTTGgatcctagtgaatacaccccagaacttgtccaataagaattttccgttgcaaaacattttgctgcGATGTGCATAAGACTCAGGTGTAAAAAAACAGATGCTCTGGCTTACCTTGAAGTCAGTGTTGTTGACATGTTCAAAGACCAAGGCGGGTGTCCGAGACACTGGGTCTTTGACGATGTCTTTGAGGGAGATGATGTTAGGGCCCCCGCGGAGGTTCTCCAGGATCTTAATTTCACGCttgattttcttcttcttgacGGGCTTGAGTATTTTCACCACAACCTTCTCGTTGTTGGTGATGTTGATTGCTTCAAACACTTCACTGTACTTCCCGCGTCCAAGCTTCCGCACCAACTGGAAGTCATCTTGATTTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1661226 True 458 lncRNA 0.44 3 42789636 42790325

Neighbor

gene id symbol gene type direction distance location
LOC110493915 LOC106565264 coding upstream 13341 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 27527 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 157271 42599720 ~ 42632365 (+)
LOC110493909 arfrp coding upstream 257090 42528749 ~ 42532546 (+)
LOC110493908 LOC106565271 coding upstream 272680 42435328 ~ 42516956 (+)
LOC110493924 LOC106591969 coding downstream 160203 42950528 ~ 42952198 (+)
LOC110493836 LOC106565017 coding downstream 469841 43260166 ~ 43270260 (+)
LOC118940459 NA coding downstream 529472 43319797 ~ 43330019 (+)
LOC118940518 NA coding downstream 533203 43323528 ~ 43323647 (+)
LOC110493832 LOC107715185 coding downstream 540104 43330429 ~ 43330803 (+)
G1451805 NA non-coding upstream 25410 42753082 ~ 42764226 (+)
G1451784 NA non-coding upstream 59834 42729602 ~ 42729802 (+)
G1451777 NA non-coding upstream 65180 42724219 ~ 42724456 (+)
G1451776 NA non-coding upstream 65421 42724011 ~ 42724215 (+)
G1451578 NA non-coding upstream 91916 42637223 ~ 42697720 (+)
G1451838 NA non-coding downstream 26220 42816545 ~ 42816745 (+)
G1451842 NA non-coding downstream 32547 42822872 ~ 42823113 (+)
G1451851 NA non-coding downstream 40871 42831196 ~ 42831396 (+)
G1451832 NA non-coding downstream 48348 42838673 ~ 42866761 (+)
G1451880 NA non-coding downstream 93355 42883680 ~ 42888834 (+)
G1450387 NA other upstream 899121 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1095918 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 1821570 40767465 ~ 41084819 (+)
G1447998 NA other upstream 2989400 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3362736 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 538261 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 538774 43329099 ~ 43409816 (+)
G1452359 NA other downstream 691935 43482260 ~ 43483693 (+)
G1452362 NA other downstream 700849 43491174 ~ 43492068 (+)
G1452369 NA other downstream 751339 43508719 ~ 43565770 (+)

Expression


Co-expression Network