G1451832


Basic Information

Item Value
gene id G1451832
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42838673 ~ 42866761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1661241
AGCTAagtagtgctcacaggcaactactcataaaacaagatcccacaaaaaaaaacatttttttttttataaggggggaggggggggggcaatgtttATTTATTAGCTTTCTGAAACACACTGGCAAGACTATGCTGTAGATCCCAAACCACTGCCCTTGACAAGTCCAACTGGGGGAGCAAAATCCTTGCAGCAAAATTAAGAGCCAAACAGTGAAAACTTTATCGGCCACATTGCGATGGGGGCACAAGTCTATTTTTCTTTTGTGGAGCAGCAAGTCATCTTGATTTCCACCCTTGTTATACCTACAGTACAAAGTAAATGCCATCATCCTTGGTTGAAGAACCCAGCACACACATAAGATAGGTACACTCAATAAGATCATTTATGTTATTTTACAATCTGGATGTAGAACAcaaagataaaaataaaaaaaagatgaaGTAATTTGTATCAATGTCTGGTCTGCACAGTGGTGAGCATTGGGTGTCAGGGTGGGGTATGGGTGGAGTCCACCTGTGCAACCATCTCTCTGTCCAACGAGAAGGTCTCGAGAGACAAAGTGGCCATGACTTAGGACAAAGGGGAAGGGGCCTGGCAAAAAGAGCTTACGTGAGAACAGAGGTTTCAAGAGTCTCTGAAAAATAAGAGGGGTACATGTACGCTGCATGTGCGGATTTGTGTGCATGTGAGGAATCGTTGAATCATTATGTGCATGTATTGAATGTGTATATTTATTTGTGTGTTGGATgaagggagagtgaaggagagttGAGATAGCAGGGCTAGTCAGGGTCAGGGGACTCAGTTGCTGAATAGCTGGCCTTCGGGGGGCTGGGGGAGCTTCATGTTCTCTTTGCACATCATGAGCCGCCGGAGCTCCTGCAGCACCACACGGATGCTGTACGAGTTCTGCCACTTGGCCAGTGCCGCCACTGCCCG

Function

NR:

description
ubiquitin-conjugating enzyme E2 variant 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1661241 True 942 lncRNA 0.46 2 42838673 42866761

Neighbor

gene id symbol gene type direction distance location
LOC110493915 LOC106565264 coding upstream 62378 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 76564 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 206308 42599720 ~ 42632365 (+)
LOC110493909 arfrp coding upstream 306127 42528749 ~ 42532546 (+)
LOC110493908 LOC106565271 coding upstream 321717 42435328 ~ 42516956 (+)
LOC110493924 LOC106591969 coding downstream 83767 42950528 ~ 42952198 (+)
LOC110493836 LOC106565017 coding downstream 393405 43260166 ~ 43270260 (+)
LOC118940459 NA coding downstream 453036 43319797 ~ 43330019 (+)
LOC118940518 NA coding downstream 456767 43323528 ~ 43323647 (+)
LOC110493832 LOC107715185 coding downstream 463668 43330429 ~ 43330803 (+)
G1451851 NA non-coding upstream 7277 42831196 ~ 42831396 (+)
G1451842 NA non-coding upstream 15560 42822872 ~ 42823113 (+)
G1451838 NA non-coding upstream 21928 42816545 ~ 42816745 (+)
G1451810 NA non-coding upstream 25937 42756284 ~ 42812736 (+)
G1451817 LOC106565263 non-coding upstream 48348 42789636 ~ 42790325 (+)
G1451880 NA non-coding downstream 16919 42883680 ~ 42888834 (+)
G1451971 NA non-coding downstream 122876 42989637 ~ 42989896 (+)
G1452000 NA non-coding downstream 158383 43025144 ~ 43025387 (+)
G1452006 NA non-coding downstream 172891 43039652 ~ 43040023 (+)
G1452007 NA non-coding downstream 175285 43042046 ~ 43042283 (+)
G1450387 NA other upstream 948158 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1144955 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 1870607 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3038437 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3411773 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 461825 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 462338 43329099 ~ 43409816 (+)
G1452359 NA other downstream 615499 43482260 ~ 43483693 (+)
G1452362 NA other downstream 624413 43491174 ~ 43492068 (+)
G1452369 NA other downstream 674903 43508719 ~ 43565770 (+)

Expression


Co-expression Network