G1451880


Basic Information

Item Value
gene id G1451880
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42883680 ~ 42888834 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1661294
gtcaaaaTATATCTTGTCCcacagttttacgtgcacggatctAGTTCATATAACTTGGTAAGGAGTCAGGTGAAAAAGAGACCTATACAAAGGTTACaatcatttttatacatagaacaAAGTAGGTAGAGTCTTGTCGCCTTCTGGATGGTCCTGAAGGGTTGGAGGCGGACCTGCTCTGgccagagcaggagccccattggtgcacagcagaaTCTTCTGTTCTGAgcacccgaccagtagaggggggttgagatgtgtgtgtttatgtaaggaGATATTTGTGTGTCAGTGGGGGTCGTGAGGCAGGACAACAGAGCTGAGGGGGGTAGTTTTAGGGGGGGTAGTTTTATTGCTGGGTGAGTGAGCTGGTTCCTGTTTTAGCAGGGTGAGGGTAGGGTAAGATGACTTGAGTCAGGCGGTTTGGCTTGGCGctgtataataataatgatgagctatgtgtatgaatgtttacatatctataTATGACAATAACGAGACATAAACTGATCTGGATAACCCTTCAGCTTTGGACAATAAAACCCGACCGTATAACGAAATATCTCTCATCAACCAGAGGTTCAACTTCTTCTTTGTTTTCTCAATAATGGGGTTCAATTCACTCCTTTGTATTTCATCCTTGCATATAACAATTCCAAGATAAGTAACcgtatctttatttattttatttatttcacctttatttaaccaggtaggcaagttgagaacaagttctcatttacaattgcgacctggccaagataaagcaaagcagttcgacacatacaacgacacagagttacacatggagtaaaaacaaacatacagtcaataatacagtataaacaagtctatatacgatgtgagataagggaggtaaaggtaaAAAGGCCATGGTcgcaaagtagatacaatatagcaagtaaaacactggaatggtagatttgcgatgggagaatgtgcaaagtagaaataaaaataatgggggtgcaaaggagcaaaataaataaataaataaaatacagtagggaaagaggtagttgtttgggctaaattataggtgggctatgtacaggtgcagtaatctgtgagctgctctgacagttggtgcttaaagctagtgagggagataagtgttttcagtttcagagatttctgtagttcgttccagtcattggcagcagagaactggaaggagaggcggccaaagaaagaattggttttgggggtgactagagatatatacctgctggagcgtgtgctacaggtgggagatgcaatggtgaccagcgagctgagataaggggggactttacctagcagggtcttgtagatgacatggagccagtgggtttggcgacgagtatgaagcgagggccagccaacgagagcgtacaggtcgcaatggtgggtagtatatggggctttggtgacaaaacggattgcactgtgatagactgcatccaatttgttgagtagggtattggaggctattttgtaaatgacatcgccaaagtcgaggattggtaggatggtcagttttacaagggtatgtttggcagcatgagtgaaggatgctttgttgcgaaataggaagccaattctagatttaactttggattggatatgtttgatatgggtctggaaggagagtttacagtctaaccagacacctaagtatttgtagttgtccacgtattctaagtcggagccgtccagagtagtactgttggacaggcgggtaggtacaggtagcgatcggttgaagagcatgcatttagttttacttgtatttaagcgcaattggaggccacggaaggagagttgtatggcattgaagcttgcctggagggttgttaacacagtatctaaagaagggccagaagtatgcaGAATGGTGTTTAATTGGGATAACATATACTTCCTGTAAAACACAATCCTTGAGTGGGAATAAGACTGACTTATCGATATTAATTTTCATACCTGAAACTAAGGAAAATGCTTCAATACAGGAAACTGCTTTAGAAACCTCATTCCTGTCTCTTAAAATATGGTGATCATCTGCCAGTTTAGATAGTTTAAATTCATTGCCAAGTGCTGAAACACCTTGAAAATTCCCTTGCTTGATATGAAGAACCATAGTTTGAGTGaccaataaaaaaattaaaatgtacTAATTGGGCAGCCCTGCCTAATGCCACAGCCAACCAATATCAAATCTTTGGGATGTCCCGTGAGCTAATTTTACAGAGCTAGAACAACCTCTATATACAGTTTAGAATGCTTTCAAAAAATGTCACCAAACCCCCAAAAACGTATTGCTTTGAACATAAACTCATGTTCTACAGTGTCAAAAGCTTTATAAAATCAACAAATATAAGAAAACTATCATCAAGAATGAGGTCATTTTAGTCAATCATATCTAAGATCAACCTGATGTTATTACTAATGTGTCGACCATGCATAAAACCAGATTGTTCTTCATTAATTATATGATGCAAGCCTTGTTTCAACCTCTTACTTGGCAAATACAAGGGCAAATTATTTCCCACCATTATTCAACAGGCTAATGGGTCTCCAGTTGTATTtgtcatatacatatatatgtaaacattcatacacatagctcatatattatACAGCGCCAAGCCAAACCGCCTGACTCAAGTCATCTTACTTACCCCTGCTAAAACAGGAACCAGCTCACTCACCCAGCAAtaaaactaccccccccccccctcagctcTGTTGTCTTACCACCCCAGgaaacaaagacattccatcgcaagaacacatacacccagccataaaactgaccccctctgttctcttctttcacgaccccctctgctctcctgtatCAGATTTACAGATACACAAATATCtccttgtataaacacacatctcaaccccctctactggtcgggtgctcagaacaagactctgctgtgcaccaatgaGGCTCCTGCTCTGGGTAGAGCAGGCCCGCCTCCATCTCTTcaggaccagtcagaagaccaccacgacaagactccacctacatcattctatgtataaaaactgTTGTAACCTTTGtctaggcctctttttcacctgactcCTTACCGAGTTATATGAACTagatccgtgcacgtaaaactgcgggacaagatatcatttgactcattaaaactgccttttgttacaactgaaatccactctgtccagcgtccgtgatttggtctcgaCTCTCCAGTAATTGAACATCAACAGAACTTGGTAGCATGAGGATGGTTATTCCTGAATTCGATCTATGATAAGTTGGTGTGAGAGGCGAGACAAATCAGCGGCTCaaaatcagacggaagagtgaTCGGTACTACAGGAAAAATcagccattcatcttgcctcaggaaatctgatcaGAGCGCTCTACTAATAAGGTAAGCAGAGCCTGTTAaatcgaaatctgcatattgtattatagtctaaaccaaattttgatcagaaagtactgaGCGTGAGTATGAATCATTGCCAAATTATTTTTTTCATAAGAACCTAAGGCCATCAAAGATATCTTGttttgggaaaaaaaaaaaaaaaaaaaaaaacatttttattaattGGCCTATACCGAGTTATTTTAATAGGAATGTGTGAATTGTGATTGACCAATGTGTTAAATTCCTTCGGGACCCTGTTTGTTCTGAAATCTGATAGAGGTGCGGTTAAGCAGAGGCTGTGTTTTAACATGTAAAGGACACAATTATGGATGTTGGAAATTCTATGTGAATTTCGTACGAATGAATGTAGTATTGAGAAAACGTATGAACTAGAGTTGACGTTCCACGATTTTGAGACCGGGGAAATTAAATTGAGAGAAACGTTTGTTGTGGAGTAACCGCCAGGATAAGTtacgtaactgggctattatGCACTCGTGCTGATAGCCTAGCCACCCAATAGTCGAATCAACGTGACGCTTTGATTCACAGCGGTCGGGCTAACACTGATTTTCAGTTTCTCAATTCTGCTGGTATTGCCTAAAGTGTTAAAATTGTTCTGACAAATGTTATAGAATCGCttgaatttactgatataagttccaAAAGGAAGTTACTGAATTATTtgcagaaagtatttaaataattcactaaACAACTTTTGGTACTCTAAATTTCTATCTATATTTCCTACagagctagaattactctgacaattgttatagaaccgcatatattcactgatatattgttccaaaaggaaatcgccgAATCAATTCTAGAAAATACCTAAATaaatcgctgaacaaattcaaattACATGCCGGAGAAGCACACACGTGAATGCCACCACGTGACTGATAAGACCTTTCTGTGCGAGGGTGGGGGCGCAGCACCACAGTACATCCCTGGTCTCGACCAGGGACGggctaagcatacaacgatagaaataaacaccacatagtaaggacTGAATATACCTAgataacgcattatacacattatcagacaAATTAGATAAAATATCTGCAGCCACCACCCCAATACCCTCCCCCACAGCAGTATATCCTGCAACAGCAACAATGGGCTCAACGGGGCACCTATACCGGTCCACCCAGAGGGGTGTGCTACAACTGTGGAACTCCTGGCCATTATACACGGGATTGTCAACAGCCACTCTCCACTCAGCAACGCCtatggagaggaagaggacgtGGAGGACCAccaagaagagggagaggaagaggaggaccacCCCCTTTTCACTACAACCAACCAGGACCTCAGCAATAGCCAGCATACAACCACCCAGGATCTAGCCACATTCAGCAGGAacagcaagattacaaccaaccaCAGTTCCAAGGTATGGCAGGGAACGCCATGCCTGGCAGGAGAAGGGAGGCAACACTTTCAGCTGCACACTGAACCAACAATGATGTGCGAAGTTGAGGGTGTCCCCCATCAGTTCCTGGTAGATACAGGATGCACCTATTCTGCTATCAGGTCCCCTCAAATGCTGTCATCTGATTCCATATCGGTGGTAGGGGTTACGGGATCACCTGAGGCTCAAAGCCGCACTATCCCTTTAACATTCTCCTGGGAAAACTCTCAGTTGAAGCACCAGTTCCTGTACTGTCCAAAATGCCCGATCAACCTACTAGGACGAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1661294 True 5155 lncRNA 0.42 1 42883680 42888834

Neighbor

gene id symbol gene type direction distance location
LOC110493915 LOC106565264 coding upstream 107385 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 121571 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 251315 42599720 ~ 42632365 (+)
LOC110493909 arfrp coding upstream 351134 42528749 ~ 42532546 (+)
LOC110493908 LOC106565271 coding upstream 366724 42435328 ~ 42516956 (+)
LOC110493924 LOC106591969 coding downstream 61694 42950528 ~ 42952198 (+)
LOC110493836 LOC106565017 coding downstream 371332 43260166 ~ 43270260 (+)
LOC118940459 NA coding downstream 430963 43319797 ~ 43330019 (+)
LOC118940518 NA coding downstream 434694 43323528 ~ 43323647 (+)
LOC110493832 LOC107715185 coding downstream 441595 43330429 ~ 43330803 (+)
G1451832 NA non-coding upstream 16919 42838673 ~ 42866761 (+)
G1451851 NA non-coding upstream 52284 42831196 ~ 42831396 (+)
G1451842 NA non-coding upstream 60567 42822872 ~ 42823113 (+)
G1451838 NA non-coding upstream 66935 42816545 ~ 42816745 (+)
G1451810 NA non-coding upstream 70944 42756284 ~ 42812736 (+)
G1451971 NA non-coding downstream 100803 42989637 ~ 42989896 (+)
G1452000 NA non-coding downstream 136310 43025144 ~ 43025387 (+)
G1452006 NA non-coding downstream 150818 43039652 ~ 43040023 (+)
G1452007 NA non-coding downstream 153212 43042046 ~ 43042283 (+)
G1452010 NA non-coding downstream 158434 43047268 ~ 43047948 (+)
G1450387 NA other upstream 993165 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1189962 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 1915614 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3083444 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3456780 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 439752 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 440265 43329099 ~ 43409816 (+)
G1452359 NA other downstream 593426 43482260 ~ 43483693 (+)
G1452362 NA other downstream 602340 43491174 ~ 43492068 (+)
G1452369 NA other downstream 652830 43508719 ~ 43565770 (+)

Expression


Co-expression Network