G1452010


Basic Information

Item Value
gene id G1452010
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43047268 ~ 43047948 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1661439
actcggcattctctcaaccagtttcatgagctAGTCACCTGGAATCTATTTCAATGAACAAGTGTGCTTtgttaagttcatttgtggaatttctttccttcttaatgtgtttgagccaatcaattgttgtgacaaggaaggggtggtagccctatttggtaaaataccaattccttattatggcaagaacagctcaaacaagcaaagagaaacaacagtccatcattacctcaagacatgaaggtcagtcaatctgggaaatttcaggaattttgaaagtttcttcaagtgcagtcgcaaaaaccatataagcgctgatgaaactggctctcataaggaccgccacaggaatggagaCCCAGAAtaacctctgctgtagaggatgagttcattcgagttaccagcctcagaaattaaacccaaataaatgcttcagagttcaagtaacagacacatcaacatcaactgttcagaggagactgcgtgaatcaggccttcatggtcgaattgctgaaaagaaaccactactaaaaggacaccaataagaagagacttggaacacgagcaatggacattagaccggtggaaatctgtcctttggtctgatgagtccaaatttgagattaaTGGTTCCAAcggccatgtctttgtgagatgcagagtaggtgaacggattatctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1661439 True 681 lncRNA 0.41 1 43047268 43047948

Neighbor

gene id symbol gene type direction distance location
LOC110493924 LOC106591969 coding upstream 95070 42950528 ~ 42952198 (+)
LOC110493915 LOC106565264 coding upstream 270973 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 285159 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 414903 42599720 ~ 42632365 (+)
LOC110493909 arfrp coding upstream 514722 42528749 ~ 42532546 (+)
LOC110493836 LOC106565017 coding downstream 212218 43260166 ~ 43270260 (+)
LOC118940459 NA coding downstream 271849 43319797 ~ 43330019 (+)
LOC118940518 NA coding downstream 275580 43323528 ~ 43323647 (+)
LOC110493832 LOC107715185 coding downstream 282481 43330429 ~ 43330803 (+)
LOC118940144 LOC106024139 coding downstream 284367 43332315 ~ 43341386 (+)
G1452007 NA non-coding upstream 4985 43042046 ~ 43042283 (+)
G1452006 NA non-coding upstream 7245 43039652 ~ 43040023 (+)
G1452000 NA non-coding upstream 21881 43025144 ~ 43025387 (+)
G1451971 NA non-coding upstream 57372 42989637 ~ 42989896 (+)
G1451880 NA non-coding upstream 158434 42883680 ~ 42888834 (+)
G1452011 NA non-coding downstream 1389 43049337 ~ 43049667 (+)
G1452013 NA non-coding downstream 4272 43052220 ~ 43052426 (+)
G1452014 NA non-coding downstream 6351 43054299 ~ 43054528 (+)
G1452015 NA non-coding downstream 7590 43055538 ~ 43055803 (+)
G1452019 NA non-coding downstream 11880 43059828 ~ 43060118 (+)
G1450387 NA other upstream 1156753 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1353550 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2079202 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3247032 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3620368 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 280638 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 281151 43329099 ~ 43409816 (+)
G1452359 NA other downstream 434312 43482260 ~ 43483693 (+)
G1452362 NA other downstream 443226 43491174 ~ 43492068 (+)
G1452369 NA other downstream 493716 43508719 ~ 43565770 (+)

Expression


Co-expression Network