XLOC_003380


Basic Information

Item Value
gene id XLOC_003380
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 17951563 ~ 17952558 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008581
gcgccacattgcgccaggtgtatgatagggcctaaaATCTTAAGTAAACCATGTAGTTTTCGTAAACTTTTTTACAATACTATGAACTCGTTAGCACGTTTGTGATAATTATTTTACCAATGAGGCTGCATGGGTAAATTCCTGAACTGAAATGCCAACAGGACTGGTCTGCAAAAACACTTCTTTTGCTCGGATCTGCTCGAGAGCTCCACAATTTGTTTGATTCTTAGCATCTTATGACGTGATGCACTAAACATACAAATCACAACAGTGTGATCATACAATACTGGGAACAGCCAATGCTGGTCACATCGATGTTCTCATACACGTCAAAGATTAGGAGAgggttcatatatttttaattattattcagtgaTTCCTCCgagtaccactagaagtaagcccgCGTAACACAATAAAAAGGCattgtctgtgtcaggtttttcctttttcagctaatggagagcaggcagaagagggagaTTCACAAGAGAATcggtagacatttaaaaaaaaaaatgctggagaaCAGCAGGTGGGGTTTTGCCGGGGTGGTCTTTGTCTTTTGCAGgttggagtggagcagaagaaggaaactcacaaggGGAACGGTGAAGATATACTTGACGACCTGGAGCTCAGCAAGCAGGTAGAACAGCTTGAACAAACTGAACAGTGGAGTTAGTTTCCAAAGAAATGTATTGAGATTAAAGACTTGAAATCTTTCTCCTGTATTTTGCAGATCAGAATGGACCACATAGAGGAAaagggaatcacacacctcagcatcGACTGGATGGTCaggaatttaattttaaaaaatgacagaCAGATTGATGGGTGCATGGATGGACGTCCTTCCAAGATGAAGGAATCTAGTCTAGTTATCTGTATCAGGATTTTTTTTCAGGAAATGGAGAGAAAGAAGGCAGAAGAGGGAGACTAACAAGAGCATTGGTGGAGAACAGCAGGTAGGTCTTATAGATACACGGATAc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008581 True 996 lncRNA 0.41 1 17951563 17952558

Neighbor

gene id symbol gene type direction distance location
XLOC_003379 NA coding upstream 19405 17930273 ~ 17932158 (+)
XLOC_003378 CR589944.3 coding upstream 31550 17919143 ~ 17920013 (+)
XLOC_003377 BX571952.1 coding upstream 437931 17440591 ~ 17513632 (+)
XLOC_003376 CR631124.1 coding upstream 622882 17328565 ~ 17328681 (+)
XLOC_003374 NA coding upstream 781386 17093078 ~ 17170177 (+)
XLOC_003381 NA coding downstream 4283 17956841 ~ 17963453 (+)
XLOC_003382 rpusd4 coding downstream 12131 17964689 ~ 18081864 (+)
XLOC_003383 si:ch211-14i3.2 coding downstream 70907 18023465 ~ 18030903 (+)
XLOC_003384 zgc:175135 coding downstream 85171 18037729 ~ 18039583 (+)
XLOC_003385 zgc:175135 coding downstream 100775 18053333 ~ 18055134 (+)
XLOC_003369 CR854846.2 misc upstream 1828481 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 5239567 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 5257300 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 5265964 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 5271535 12679732 ~ 12680028 (+)
XLOC_003392 BX296530.1 non-coding downstream 723884 18676442 ~ 18676557 (+)
XLOC_003393 NA non-coding downstream 749804 18702362 ~ 18708059 (+)
XLOC_003394 NA non-coding downstream 788469 18741027 ~ 18742103 (+)
XLOC_003395 CU207354.2 non-coding downstream 880355 18832913 ~ 18833246 (+)

Expression


Co-expression Network