G1452048


Basic Information

Item Value
gene id G1452048
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43250676 ~ 43252674 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1661478
atatatgatagttggcatctaaatgagtaggaaaaagtgggtttggtgtcataatgacatctaattgactgatggacactgacttgctagttgacttttgtacatttgcaatatgtttaaacagagagggaccatcaccaaaatggcattctgaaatcaacaaaaaaatggcatcaccatagtctccagactgtgctgagttcaacgagctatcccgcttgaccgtagctcgctcggtctaggcgcagcaaccattagaatagtaggcccaaaatgaagcctgcaccacaatgtcatttgcttttgagtgacagtgagagaaccgttagggtgagaagaaaaattccaccataggaatgttcctaaggtcctcccgatctgaacaagcctaaccttgaccgtgtggcattaacccttaacagtaaaacagtgttttttgatctcacagattacagtgtcatctctccccataggaatacatagcctgcaccac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1661478 True 493 lncRNA 0.43 2 43250676 43252674

Neighbor

gene id symbol gene type direction distance location
LOC110493924 LOC106591969 coding upstream 298478 42950528 ~ 42952198 (+)
LOC110493915 LOC106565264 coding upstream 474381 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 488567 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 618311 42599720 ~ 42632365 (+)
LOC110493909 arfrp coding upstream 718130 42528749 ~ 42532546 (+)
LOC110493836 LOC106565017 coding downstream 7492 43260166 ~ 43270260 (+)
LOC118940459 NA coding downstream 67123 43319797 ~ 43330019 (+)
LOC118940518 NA coding downstream 70854 43323528 ~ 43323647 (+)
LOC110493832 LOC107715185 coding downstream 77755 43330429 ~ 43330803 (+)
LOC118940144 LOC106024139 coding downstream 79641 43332315 ~ 43341386 (+)
G1452043 NA non-coding upstream 5822 43244509 ~ 43244854 (+)
G1452038 NA non-coding upstream 9305 43241049 ~ 43241371 (+)
G1452036 NA non-coding upstream 11276 43239170 ~ 43239400 (+)
G1452035 NA non-coding upstream 12131 43238310 ~ 43238545 (+)
G1452034 NA non-coding upstream 20580 43229873 ~ 43230096 (+)
G1451958 NA non-coding downstream 18639 43271313 ~ 43272057 (+)
G1451953 NA non-coding downstream 19477 43272151 ~ 43273171 (+)
G1452073 NA non-coding downstream 63260 43315934 ~ 43318830 (+)
G1452087 NA non-coding downstream 68111 43320785 ~ 43321022 (+)
G1452089 NA non-coding downstream 73721 43326395 ~ 43326698 (+)
G1450387 NA other upstream 1360161 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1556958 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2282610 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3450440 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3823776 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 75912 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 76425 43329099 ~ 43409816 (+)
G1452359 NA other downstream 229586 43482260 ~ 43483693 (+)
G1452362 NA other downstream 238500 43491174 ~ 43492068 (+)
G1452369 NA other downstream 288990 43508719 ~ 43565770 (+)

Expression


Co-expression Network