G1451953



Basic Information


Item Value
gene id G1451953
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43272151 ~ 43273171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1661380
ggaaaggcgtctgaatactttccgtgtTTGTGTGGTATCATGATTGGTTACGTTTTGATTCAAATGTATTTTGTCAAGAACAGATTGTCTGAAGTGAATCCcacattgatgaaaatacctTGATACATGCTACCATGTCACTAGCAGTGGCCAAGCTTGATCCTCCAAGGTGTTTTATGATTTAATTTGGACGGTGCACAAATCGGCATGATGTTATTCCTCTCGGACAACTCGCTGTGTGATAACACCCGCATTCCACCCACTCAATTATATCATACATGCATGACTGGTGATCTCATTTTTTTATGTCAGGCCTTATCTCAGTGATGACCATGCTTGTAAACTAAGCTATTTGAACAGGTTATGGTTTATCGCTGTTGACAGAAAACAACAAGACTTGTCACTGCACATGGACTATACGCTTCCGGGGATCTGTAATATAGCCATTTTGAATAAATGTTAAACTTGGTACTTAGCCATTTCTTGTCAGATGTTTATTTACCAAATATTTTAAAATGCCAAATGAAAAAATCATCTTCCCAATACTTTCAGGTTAACATTACTGTAAATGTTTGGAATAATTGGTTTCTTCATGCCTAAGAAGCCTATAgtgggaaatgtttttttttaattaccaATGCTAGTACTAACTATGTCTTTAGTAGATTACTTGTTAAAAACAATTGGTATTTAACTGtcaaaatattttgtctttcagGTTGGCACTTCCCCTTTCTAAGTTGTTGTATGTGTTAACATTTTTATGTACACTAGAAGCaggtttttttattttgtaagggTTTGATTTCTTGTAAACAATTTTAAGCCGTTTATGTTTTGTAGAAGGATTGCTATGTAATTGTTCAGGGGAACTGAATTGAGCCATGTCATTTgcatgggggaaaaaaatatgcTGCTTTGTCACAACGAGATGTGACGCTCAATTGAGTGTAGAAGTCAATAAATCATTGATTTCTGCACGCAGGTTCTGATTATATTTGGAAATAAAGCTATTTTTATG

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1661380 True 1021 lncRNA 0.35 1 43272151 43273171

Neighbor


gene id symbol gene type direction distance location
LOC110493836 LOC106565017 coding upstream 1891 43260166 ~ 43270260 (+)
LOC110493924 LOC106591969 coding upstream 319953 42950528 ~ 42952198 (+)
LOC110493915 LOC106565264 coding upstream 495856 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 510042 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 639786 42599720 ~ 42632365 (+)
LOC118940459 NA coding downstream 46626 43319797 ~ 43330019 (+)
LOC118940518 NA coding downstream 50357 43323528 ~ 43323647 (+)
LOC110493832 LOC107715185 coding downstream 57258 43330429 ~ 43330803 (+)
LOC118940144 LOC106024139 coding downstream 59144 43332315 ~ 43341386 (+)
LOC118940451 NA coding downstream 60259 43333430 ~ 43334041 (+)
G1451958 NA non-coding upstream 94 43271313 ~ 43272057 (+)
G1452048 NA non-coding upstream 19477 43250676 ~ 43252674 (+)
G1452043 NA non-coding upstream 27297 43244509 ~ 43244854 (+)
G1452038 NA non-coding upstream 30780 43241049 ~ 43241371 (+)
G1452036 NA non-coding upstream 32751 43239170 ~ 43239400 (+)
G1452073 NA non-coding downstream 42763 43315934 ~ 43318830 (+)
G1452087 NA non-coding downstream 47614 43320785 ~ 43321022 (+)
G1452089 NA non-coding downstream 53224 43326395 ~ 43326698 (+)
G1452090 NA non-coding downstream 53547 43326718 ~ 43326932 (+)
G1450387 NA other upstream 1381636 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1578433 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2304085 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3471915 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3845251 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 55415 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 55928 43329099 ~ 43409816 (+)
G1452359 NA other downstream 209089 43482260 ~ 43483693 (+)
G1452362 NA other downstream 218003 43491174 ~ 43492068 (+)
G1452369 NA other downstream 268493 43508719 ~ 43565770 (+)

Expression



Co-expression Network