G1452073


Basic Information

Item Value
gene id G1452073
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43315934 ~ 43318830 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1661504
TGTGGTCCCTGTAGCGGCCGCTGCGCTCCCTGCTCCGGGTGCGGCTCCGGCGCCTCTCCTTGCTGCGGCTCCGCTTTCGCTCGCGGCTGCGGCTCCTCTTGTGGTCATGGCTCTTCTTGCGATCACGGCTCTTGCTTCTCTTCCGGTCTTTGCTTCGGCTCCTGCTCTTCTTTTTCTTCTTGCTGCGCTCCTCATGGCCATTGGGACTACTGGGCTTGATCTCATCCTAAGCAGGGCCAACAGAAGAACAGCATAAGGACGAAGAGGCAACATTTCAAGTTGTCAGGATCAAGGTGTGTGGGAACAAGAGAAAATATAGTTTAAAAATAGTATTCATACAAAAGTTAACATAGGGACAGATCTACAGTTAAGTTATTTTAATGAGTGTCTATCAGCCCCCTATCATAAATGTTGATTACTCATTTTGCATAAAAATCAATGAGTACTATGAGTACTAATACATAACCTACATCTCAGGTGCATTTGTCTTCAGCAGCCCCATCAGGATCATTACCAAGGCTATTCTttgcctaacatgctgaccacaccgctcagGTTGCGTgcacgagcgttgcaaaataaatgtacatattCAATCATTGTGgccaggtgctaaaatagaaacaggttctatttgtgatgctcaACACGCTGCAAGTCcagcttctcccatctcctcattggtttttaagagcatatacccacgtCCCAAGTCCTCATTGGtgtttaggagcatatacccacatgggtgattgaaagattaacTAACGTCCACACGCCAGCCGGTTGTAATAATGCACCGTAAAGCTGGTTGCAAACGCCATATTAAGCCGAAAGATAAAATAAAAAGCCAGAGGAAGGAGAGAtcttatctgtggattaattgtctgagtagaggaccttgtgcatttcaggtaaaacaacccaatgtttatatcccaggacaaattagctagcaacagcaagctagctaaattgccatagatgttcaatgctttttgacctgttcCAAAATGAATATGATtggttcagtttgttttgatatttcaacctgcgtgtcctgatcgtgttTGGTGTGGAGGTACAAAATCACATGCATGTGtccggtttggtcagcatgtaagacCAATGTGCCCATGCTAGCAGCGAGACAGATCGATTTCCAGTGGGGGGGATGCCATTCTAGTGATCTCCACCCAGTTTAATTTTGTGGACTGTAAGAGCTCGCCCTGAAGCAAACAGGGATTCACACTGCTTAGCAATATTGACTACCAAGGAAAGCTATGATTAAATTATAAGATGAGGTACACAAAATTCCTTAGTTGGTGCTGTAGCCAGCAGCATAGAAGAGTTCCATGTTTCCTACAGTTTGTACTTAGTTCTATCAAATTTAGCCTTTACATAAAACAGTGACAAATATAATGGACTTATGGGGAAATAAACATTTGTGAATGAGCATGCAAAAATAATTACATTCTGGTCAACCATGGAGAAAACCTGTTTAACACAAAATAGCGTTATGTAAAATAACTTGGTGAAAGCAGCATAATAACAAAATCCACACATTCTCTCTCACTAGAATGAAAGAGTGAACATTGTGAACGGA
>TU1661505
TGTGGTCCCTGTAGCGGCCGCTGCGCTCCCTGCTCCGGGTGCGGCTCCGGCGCCTCTCCTTGCTGCGGCTCCGCTTTCGCTCGCGGCTGCGGCTCCTCTTGTGGTCATGGCTCTTCTTGCGATCACGGCTCTTGCTTCTCTTCCGGTCTTTGCTTCGGCTCCTGCTCTTCTTTTTCTTCTTGCTGCGCTCCTCATGGCCATTGGGACTACTGGGCTTGATCTCATCCTTTCTATACGGAGCCTCAAGCATTGCTTCTATATCAAA

Function

NR:

description
PREDICTED: RNA-binding protein 39-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1661504 False 1606 lncRNA 0.43 2 43315934 43317649
TU1661505 True 265 lncRNA 0.58 3 43315934 43318830

Neighbor

gene id symbol gene type direction distance location
LOC110493836 LOC106565017 coding upstream 45674 43260166 ~ 43270260 (+)
LOC110493924 LOC106591969 coding upstream 363736 42950528 ~ 42952198 (+)
LOC110493915 LOC106565264 coding upstream 539639 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 553825 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 683569 42599720 ~ 42632365 (+)
LOC118940459 NA coding downstream 967 43319797 ~ 43330019 (+)
LOC118940518 NA coding downstream 4698 43323528 ~ 43323647 (+)
LOC110493832 LOC107715185 coding downstream 11599 43330429 ~ 43330803 (+)
LOC118940144 LOC106024139 coding downstream 13485 43332315 ~ 43341386 (+)
LOC118940451 NA coding downstream 14600 43333430 ~ 43334041 (+)
G1451953 NA non-coding upstream 42763 43272151 ~ 43273171 (+)
G1451958 NA non-coding upstream 43877 43271313 ~ 43272057 (+)
G1452048 NA non-coding upstream 63260 43250676 ~ 43252674 (+)
G1452043 NA non-coding upstream 71080 43244509 ~ 43244854 (+)
G1452038 NA non-coding upstream 74563 43241049 ~ 43241371 (+)
G1452087 NA non-coding downstream 1955 43320785 ~ 43321022 (+)
G1452089 NA non-coding downstream 7565 43326395 ~ 43326698 (+)
G1452090 NA non-coding downstream 7888 43326718 ~ 43326932 (+)
G1452364 NA non-coding downstream 178706 43497536 ~ 43497760 (+)
G1450387 NA other upstream 1425419 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1622216 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2347868 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3515698 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3889034 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 9756 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 10269 43329099 ~ 43409816 (+)
G1452359 NA other downstream 163430 43482260 ~ 43483693 (+)
G1452362 NA other downstream 172344 43491174 ~ 43492068 (+)
G1452369 NA other downstream 222834 43508719 ~ 43565770 (+)

Expression


Co-expression Network