G1452366


Basic Information

Item Value
gene id G1452366
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43499894 ~ 43517376 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1661842
tgccctgtcttgtcttgtcctgtcttgtcctgtcttgtcctgtcctgtcttgtcctgtcttgtcctgtcttgtcctgtcttgtcctgtcttgtcttgccctgtcttgtcttgtcttgtcctgtcttgtcctgtcttgtcctgtcttgtcctgtcctgtcttgtcctgtcttgtcctgtcttgtcttgtcttgtcctgtcttgtcctgtcttgccctgccctgccctgccctgccctgtcttgtcttgccttgtcctgccttgtcttgtcctgtcttgtcttgccttgtcctgccttgtcttgccctgtcctgtcctgtcctgtcttgtcttgtcctgtcctgtcctgtcttgtactgccctgtcttgtcctgccttgtcttgtcctgccctgtcctgtcctgccctgtcctgccctgtcttgtcttgtcctgtcctgccctgccctgccctgccttgtcttgtcctgccttgtcctgtcctgtcctgtcctgtcctgccctgccctgtcctgtcctgtc
>TU1661841
cctgtcttgtcttgtcctgtcctgtcctgtcttgtcctgccctgtcttgtcctgccttgtcttgtcctgccctgtcctgtcctgtcctgccctgtcctgtcttgtcttgtcctgccctgtcctgtcctgtcctgccctgtcctgtcctgtcctgtcctgccctgtcttgtcttgtcctgccctgccctgccttgtcttgtcctgccttgtcctgtcctgtcctgtcctgtcctgtcctgtcctgtcttgtcctgccttgtcttgtcctgccctgtcttgtcctgtcttgtcttgtc

Function

NR:

description
PREDICTED: transcription activator BRG1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1661842 False 519 lncRNA 0.56 2 43499894 43505382
TU1661841 True 296 lncRNA 0.58 2 43504477 43517376

Neighbor

gene id symbol gene type direction distance location
LOC118940464 LOC107581013 coding upstream 40691 43458743 ~ 43459203 (+)
LOC118940465 zgc:163040 coding upstream 41638 43445921 ~ 43458256 (+)
LOC118940460 LOC108414267 coding upstream 47461 43450554 ~ 43452433 (+)
LOC118940462 LOC103395674 coding upstream 57858 43441506 ~ 43442036 (+)
LOC118940146 LOC106906734 coding upstream 58742 43440766 ~ 43441152 (+)
plxnb1b LOC106565257 coding downstream 422541 43939917 ~ 44074496 (+)
LOC110493929 LOC106565256 coding downstream 564920 43985916 ~ 44097283 (+)
setd5 LOC106565254 coding downstream 581580 44098956 ~ 44148363 (+)
mtmr14 mtmr14 coding downstream 754908 44272284 ~ 44315602 (+)
LOC110493933 LOC106565248 coding downstream 807339 44324715 ~ 44545834 (+)
G1452364 NA non-coding upstream 2134 43497536 ~ 43497760 (+)
LOC118940144 LOC106024139 non-coding upstream 158508 43332315 ~ 43341386 (+)
G1452090 NA non-coding upstream 172962 43326718 ~ 43326932 (+)
G1452089 NA non-coding upstream 173196 43326395 ~ 43326698 (+)
G1452087 NA non-coding upstream 178872 43320785 ~ 43321022 (+)
G1452394 NA non-coding downstream 50025 43567401 ~ 43574306 (+)
G1452398 NA non-coding downstream 82284 43599660 ~ 43599912 (+)
G1452401 NA non-coding downstream 117756 43635132 ~ 43635333 (+)
G1452406 NA non-coding downstream 148907 43666283 ~ 43666899 (+)
G1452408 NA non-coding downstream 170919 43688295 ~ 43688514 (+)
G1452362 NA other upstream 7826 43491174 ~ 43492068 (+)
G1452359 NA other upstream 16201 43482260 ~ 43483693 (+)
G1451948 LOC570405 other upstream 40062 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other upstream 90078 43329099 ~ 43409816 (+)
G1450387 NA other upstream 1609379 41792883 ~ 41890515 (+)
G1452369 NA other downstream 24288 43508719 ~ 43565770 (+)
G1452399 NA other downstream 88937 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 995693 44513069 ~ 44520477 (+)
G1453605 LOC106565239 other downstream 1318621 44835997 ~ 44854739 (+)
G1453889 NA other downstream 1533353 45050729 ~ 45051005 (+)

Expression


Co-expression Network