G1452827


Basic Information

Item Value
gene id G1452827
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44572761 ~ 44573379 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1662386
ACCTGAGCCTCCTTTCCTTCTCCTTGGTCCTCTCGGCCATCAGCAGTCGCTCCTTGGGGATCATCTCCACGTTCTCCAGCAGCTCACCCAGGCGGCTCTCGATAACCGTCAGCATCTGCAGCGTGCTCAGGTTGGCCTCTGTGTCACCCACGCAGCTCCGGTACACCTCCTCCACCTTAGCGCCCAGGGAGTCCAACATAAACTCCTACATTGAAGAGGCGGGCCCTCAGCTCCAGCTCGGCAGCCCGGTCCCTCTCCCTCTGGATGGTGTGGGTCATGATGTCGATCTGCTGGGTCAGCTGGACGGTTTCCAGCTCCCtgcagagaggggggggagcc

Function

NR:

description
cilia- and flagella-associated protein 100-like isoform X2

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1662386 True 339 lncRNA 0.62 2 44572761 44573379

Neighbor

gene id symbol gene type direction distance location
si:dkey-156n14.3 LOC106565245 coding upstream 1691 44552913 ~ 44571070 (+)
LOC110493933 LOC106565248 coding upstream 26927 44324715 ~ 44545834 (+)
mtmr14 mtmr14 coding upstream 257159 44272284 ~ 44315602 (+)
setd5 LOC106565254 coding upstream 424398 44098956 ~ 44148363 (+)
LOC110493929 LOC106565256 coding upstream 475478 43985916 ~ 44097283 (+)
LOC110493936 LOC106565244 coding downstream 28524 44601903 ~ 44615849 (+)
LOC110493938 LOC106565241 coding downstream 196097 44769476 ~ 44797689 (+)
LOC118940467 NA coding downstream 273738 44847117 ~ 44858271 (+)
LOC110493942 bin2 coding downstream 322584 44895963 ~ 44930156 (+)
LOC110493946 LOC106565237 coding downstream 396099 44969478 ~ 45029092 (+)
G1452821 NA non-coding upstream 849 44571249 ~ 44571912 (+)
G1452784 NA non-coding upstream 83002 44489549 ~ 44489759 (+)
G1452780 NA non-coding upstream 86205 44486317 ~ 44486556 (+)
G1452762 NA non-coding upstream 107359 44461171 ~ 44465402 (+)
G1453368 NA non-coding downstream 35296 44608675 ~ 44608890 (+)
G1453370 NA non-coding downstream 36840 44610219 ~ 44610431 (+)
G1453372 NA non-coding downstream 38246 44611625 ~ 44611828 (+)
G1453373 NA non-coding downstream 38556 44611935 ~ 44612221 (+)
G1453374 NA non-coding downstream 38880 44612259 ~ 44612505 (+)
G1452804 LOC105896813 other upstream 52284 44513069 ~ 44520477 (+)
G1452399 NA other upstream 965980 43606313 ~ 43606781 (+)
G1452369 NA other upstream 1009060 43508719 ~ 43565770 (+)
G1452362 NA other upstream 1080693 43491174 ~ 43492068 (+)
G1452359 NA other upstream 1089068 43482260 ~ 43483693 (+)
G1453605 LOC106565239 other downstream 262618 44835997 ~ 44854739 (+)
G1453889 NA other downstream 477350 45050729 ~ 45051005 (+)
G1453914 NA other downstream 496592 45069971 ~ 45070925 (+)
G1454049 NA other downstream 685096 45258475 ~ 45259571 (+)
G1454127 NA other downstream 761915 45335294 ~ 45336523 (+)

Expression


Co-expression Network