G1453573


Basic Information

Item Value
gene id G1453573
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 44748104 ~ 44752126 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1663213
gtttattttgtaccTTTATTAAGCACTAAGACCACGGTTTCTTTCGCAGATGCatgaacacatcaataaacaacaattATACTATACATATCTGTATACACCTCAATTACACAATGCATGAAAAGcaaacacagaacacaaaaagcaaaacacaatcatATGAAACACACTCATCCACCTGAATTGCCCAACATGAGTATTAAGACTAGCTGTATTTCTAAGATATGCTATTGAGCTGCAAACCACACATGGTTTAGAGCTGCAAACCACACAGGGTTTATATGCAGACGTGATGTATCCAAGCCCAGAATGAGTGCTGCAACAAAGGGGTTTATTTGCCCAATCTGGGCTAAGAGGAGTTTTGACCCAAGTCTACTACACATGGTCTCAGTCTAGATAGGGGAAATACACtactcttctctaccactctttGAAAGAAAGATGGGCTTTTCTGACCTCTACTGGTCATATAACTGTACTACAAGTGGAGCTAAATTCAATGAttagtttatctttatttaactaggtaagtcagttaagaacaaattcttatttacaatgacggcataccccggccaaaccctaattgtacactgccctatgggactcccaatcacgggcaGTTGTGATACaccctggaatcaaaccagtctgtagtgatgcctctagcactgagatgcaatcccttagaccgctgcgccactcaggagcctacAAATTATGGGGACCTCCTTCCCGTATACAAACATCACGTGACTCATTGTAAAAACGAGGAGAATCtagtcgtgttcattaggcaccacaCTGAAGAAAATGTACTAAAATGGAGGGACTACCTAGTCTCGTTCAATAAGAAATACTAATTTGTTTTACTTTACTTGATTgagtttatttttacagggacagttaACATGAATCAACATTTCAGTAATGTATTTCAATTTTTTTACATTAAATTGTTAAATGTTTTCCGTCGTGTGCACTAATGAACACGCCCCTGGAGTTTTAACATTGTCCAAAATCATGCTGCAATAGATAGGACTTGCTATAGCTATTTATAAAGTTACCCTGCATGCGTGTTTGGACAGTAAAGTCAAATTTGAAGTCTGTTTAAAAACACCCTTTCAGTGAACATATCGGTAATGACGTTCCCTCTATAGTTGAATTGGTAAACATACAGCAAGTTAATTCCCTTTAATAATATGTCATATTTTCctaatatactgtagctgtcagattGAGAACTGGCATTCTTTGAATAGGTGTAAGTAAAATGTTAGGCAACGTTGTTaacattttaaatatataaacCTCTGTCTTCCACACATAGGGAAGAGAATGACATCCAAGATgtacagatttaaaaaaatatattagacAGTGATATGCACTCCATTAGTGACTCCCCCAAGCTATGGATATCCATCTGTTTGACTACCTTGAAGTGCTCCGTTTAAGACGGTCTATAGACGGTCTATAAATGATAGATACAATACAAGGTACCAGATAACTAGTTACATGGACTTTTTCCTCATGGAactcactagctaggtttccatccaattggcgacagattttcatgtaaATATTCAAAAACTTTTCCACCAGAGATGTTTACATAaaattgacttgttgcggataaCTTAGTGGACATAAAATAGACAAATAGTGTGGTTAAATTCCCATGAACTGAATTAAAAATACAAGttgaatgggtttccattgcattttcaactctagtGATGGTTTTGTCAAAAATAAAATTGTGTTATATAGCttatgtgcccactctggtcttggcacgtgtactctagccaacagcttgcagatacagtgcaggtggGCTTTCCTACATGATGAGATTGTAGTATGGACAAAAGAGCGAGATTACCTCGATTTGTCAaacagccaagcatcgatcatcatgtgaCCAGAATAAGAGTTTAAGACGGTCTATATTTATTGGAACtgatcaagctcatcaccgtgcactttcaccagcctgtgaagttcatcatttattGAATCGGTAGCCTAATAAACAACATGTTTTTTGAGTcgcagtgggaggaccacacaacatatcatcttGTGACTTTTACTTCGATATATTTGAGCATAAAGGCGTTTCCAGCGCCATTTGTTGCATAATTTactttaccgacacaaaaagatcccactctgtcgacatttggaaagttaaCTGTACCGACAAATTAGCTGCTTCCATCAGGGCTGTCGTGACATATTTTTTCTCCAACGGACTTTACTCGCTTAAAAAAGATTGGATGGAGAACCACATACacagtgccgtgaaaaagtatttgaccCCTTTCTGATTCTCTCTCATTTTTGGGGGgaactgaatgttatcagatcttcagccaaaacctaatattagataaagggaacctgaatTTACAAATAAGTATATATTTGTTGTGTTATTAgtaaagttatgcaacacccaattcccctgtgtgaaaaaagtaattgcccccttacacacAATAACTGGTTGTTTTAGACTTGTTTGTTTTGGATTAAATtcagctctgtatcagagaactctacaggagaatgtcaggccatccgtctgtgtGCTGAAGCTGAaacgcagctgggtcatgcagcaagacaatgatctaaAACACGCAATCAAGTCTGcctgaaaatggctaaaaagc
>TU1663211
ACACCTCAATTACACAATGCATGAAAAGcaaacacagaacacaaaaagcaaaacacaatcatATGAAACACACTCATCCACCTGAATTGCCCAACATGAGTATTAAGACTAGCTGTATTTCTAAGATATGCTATTGAGCTGCAAACCACACATGGTTTAGAGCTGCAAACCACACAGGGTTTATATGCAGACGTGATGTATCCAAGCCCAGAATGAGTGCTGCAACAAAGGGGTTTATTTGCCCAATCTGGGCTAAGAGGAGTTTTGACCCAAGTCTACTACACATGGTCTCAGTCTAGATAGGGGAAATACACtactcttctctaccactctttGAAAGAAAGATGGGCTTTTCTGACCTCTACTGGTCATATAACTGTACTACAAGTGGAGCTAAATTCAATGAttagtttatctttatttaactaggtaagtcagttaagaacaaattcttatttacaatgacggcataccccggccaaaccctaattgtacactgccctatgggactcccaatcacgggcaGTTGTGATACaccctggaatcaaaccagtctgtagtgatgcctctagcactgagatgcaatcccttagaccgctgcgccactcaggagcctacAAATTATGGGGACCTCCTTCCCGTATACAAACATCACGTGACTCATTGTAAAAACGAGGAGAATCtagtcgtgttcattaggcaccacaCTGAAGAAAATGTACTAAAATGGAGGGACTACCTAGTCTCGTTCAATAAGAAATACTAATTTGTTTTACTTTACTTGATTgagtttatttttacagggacagttaACATGAATCAACATTTCAGTAATGTATTTCAATTTTTTTACATTAAATTGTTAAATGTTTTCCGTCGTGTGCACTAATGAACACGCCCCTGGAGTTTTAACATTGTCCAAAATCATGCTGCAATAGATAGGACTTGCTATAGCTATTTATAAAGTTACCCTGCATGCGTGTTTGGACAGTAAAGTCAAATTTGAAGTCTGTTTAAAAACACCCTTTCAGTGAACATATCGGTAATGACGTTCCCTCTATAGTTGAATTGGTAAACATACAGCAAGTTAATTCCCTTTAATAATATGTCATATTTTCctaatatactgtagctgtcagattGAGAACTGGCATTCTTTGAATAGGTGTAAGTAAAATGTTAGGCAACGTTGTTaacattttaaatatataaacCTCTGTCTTCCACACATAGGGAAGAGAATGACATCCAAGATgtacagatttaaaaaaatatattagacAGTGATATGCACTCCATTAGTGACTCCCCCAAGCTATGGATATCCATCTGTTTGACTACCTTGAAGTGCTCCGTTTAAGACGGTCTATAGACGGTCTATAAATGATAGATACAATACAAGGTACCAGATAACTAGTTACATGGACTTTTTCCTCATGGAactcactagctaggtttccatccaattggcgacagattttcatgtaaATATTCAAAAACTTTTCCACCAGAGATGTTTACATAaaattgacttgttgcggataaCTTAGTGGACATAAAATAGACAAATAGTGTGGTTAAATTCCCATGAACTGAATTAAAAATACAAGttgaatgggtttccattgcattttcaactctagtGATGGTTTTGTCAAAAATAAAATTGTGTTATATAGCttatgtgcccactctggtcttggcacgtgtactctagccaacagcttgcagatacagtgcaggtggGCTTTCCTACATGATGAGATTGTAGTATGGACAAAAGAGCGAGATTACCTCGATTTGTCAaacagccaagcatcgatcatcatgtgaCCAGAATAAGAGTTTAAGACGGTCTATATTTATTGGAACtgatcaagctcatcaccgtgcactttcaccagcctgtgaagttcatcatttattGAATCGGTAGCCTAATAAACAACATGTTTTTTGAGTcgcagtgggaggaccacacaacatatcatcttGTGACTTTTACTTCGATATATTTGAGCATAAAGGCGTTTCCAGCGCCATTTGTTGCATAATTTactttaccgacacaaaaagatcccactctgtcgacatttggaaagttaaCTGTACCGACAAATTAGCTGCTTCCATCAGGGCTGTCGTGACATATTTTTTCTCCAACGGACTTTACTCGCTTAAAAAAGATTGGATGGAGAACCACATACacagtgccgtgaaaaagtatttgaccCCTTTCTGATTCTCTCTCATTTTTGGGGGgaactgaatgttatcagatcttcagccaaaacctaatattagataaagggaacctgaatTTACAAATAAGTATATATTTGTTGTGTTATTAgtaaagttatgcaacacccaattcccctgtgtgaaaaaagtaattgcccccttacacacAATAACTGGTTGTTTTAGACTTGTTTGTTTTGGATTAAATtcagctctgtatcagagaactctacaggagaatgtcaggccatccgtctgtgtGCTGAAGCTGAaacgcagctgggtcatgcagcaagacaatgatctaaAACACGCAATCAAGTCTGcctgaaaatggctaaaaagcaacacatttgaagttAAGTCCAGGACTAATCCCAATTGAGAGGTTGTGGCAGTTCAATGCTTGAAAATCCACAAATGTCAccgagttaaagcagttctgcatggaagagtgggccaaaactCCTCCACAGCGACGTTAGAGACCGATCAACtaacaggaagcatttggttggagtcattgcagttAAAGGtgagttattgagtgtaaggggtcAATTACTTTCTCACACAGGAGCATTGGGTGTTACATTTGTGCCATGTAGTGTATTTCATAAAGttatgtatgtggacacctgcacgtcaaacatctcattccaaaatcatggacatttgctgctacaacagcctccactcttctgagaaggctttccactagatgttggaacattgctgcagggacttgcttccatttagccacaagagaatttgtgaggtcgggcactgatgtttggcgattaggcctggctcgcagtcggtgttccaattcatcccaaaggtgttcgatggggttgaggtcagggctctgtgcaggccagtcaagttcttccacaccatgtcgacaaaccatttctgtatggaccttgctttgcgcacgggggcattgccatgctgaaacaggaaagggccttccccaaactgttgccgcaaagttggaggcacagaatcatatagaatgttactggaTGCTGTAGCGttgagatttcccttcactggaactaagaggcctagtccgaaccatgaaaaacagctccagaccactATTCCTCCTACACCAAACTTCACAGCTGGTACTATGCATTAgggaaggtagcgttctcctggcatttgcCAAACCAAGATTTGTCCATtgtactgccagatggtgaagtgtgatttatcactccatagaatgcatttccactgctccagagttcaatggcggcgagctttacaccactccaggcgacgattggcattgcgcatggtgatcttaggctcgaCGAACGGTTCTTATGCTGACGTTTttttccagaagcagtttggaactcagtagtgagtgttgcaaccaaggacaggcgattattttttttttacacacttcagcactcggtggccccgttctgtgaggttgcgtggcctaccactttgcggctgagccattgttgctctgTTCCCACTTCACAAGAACAGCACTTACAGGGCagctatgacagtgccacgttgaaagtcactgtgctCTTCAGTATGGGATtttatgcacctgtcagcaacaggtgtggctgaaatagccgaatccactcatttgaaagggtgtccacatacttttatgtatgtgtgtatatatatatatatatata

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1663213 False 2687 lncRNA 0.38 1 44748104 44750790
TU1663211 True 3926 lncRNA 0.41 1 44748201 44752126

Neighbor

gene id symbol gene type direction distance location
LOC110493936 LOC106565244 coding upstream 132255 44601903 ~ 44615849 (+)
si:dkey-156n14.3 LOC106565245 coding upstream 177034 44552913 ~ 44571070 (+)
LOC110493933 LOC106565248 coding upstream 202270 44324715 ~ 44545834 (+)
mtmr14 mtmr14 coding upstream 432502 44272284 ~ 44315602 (+)
setd5 LOC106565254 coding upstream 599741 44098956 ~ 44148363 (+)
LOC110493938 LOC106565241 coding downstream 17350 44769476 ~ 44797689 (+)
LOC118940467 NA coding downstream 94991 44847117 ~ 44858271 (+)
LOC110493942 bin2 coding downstream 143837 44895963 ~ 44930156 (+)
LOC110493946 LOC106565237 coding downstream 217352 44969478 ~ 45029092 (+)
LOC110493947 LOC106565236 coding downstream 311556 45063682 ~ 45069411 (+)
G1453568 NA non-coding upstream 2366 44745509 ~ 44745738 (+)
G1453563 NA non-coding upstream 8481 44739308 ~ 44739623 (+)
G1453544 NA non-coding upstream 22745 44725116 ~ 44725359 (+)
G1453541 NA non-coding upstream 26164 44721715 ~ 44721940 (+)
G1453535 NA non-coding upstream 29299 44717893 ~ 44718805 (+)
G1453612 NA non-coding downstream 67581 44819707 ~ 44819991 (+)
G1453637 NA non-coding downstream 136265 44888391 ~ 44888641 (+)
G1453661 NA non-coding downstream 196361 44948487 ~ 44948877 (+)
G1453666 NA non-coding downstream 277241 45029367 ~ 45029564 (+)
G1452804 LOC105896813 other upstream 227627 44513069 ~ 44520477 (+)
G1452399 NA other upstream 1141323 43606313 ~ 43606781 (+)
G1452369 NA other upstream 1184403 43508719 ~ 43565770 (+)
G1452362 NA other upstream 1256036 43491174 ~ 43492068 (+)
G1452359 NA other upstream 1264411 43482260 ~ 43483693 (+)
G1453605 LOC106565239 other downstream 83871 44835997 ~ 44854739 (+)
G1453889 NA other downstream 298603 45050729 ~ 45051005 (+)
G1453914 NA other downstream 317845 45069971 ~ 45070925 (+)
G1454049 NA other downstream 506349 45258475 ~ 45259571 (+)
G1454127 NA other downstream 583168 45335294 ~ 45336523 (+)

Expression


Co-expression Network