G1454048


Basic Information

Item Value
gene id G1454048
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45251173 ~ 45255211 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1663739
TCGTTTATTATTTGATTTGCAAAACATCGGACAAAAATAACATTACATAAACACCCATTTATAATGTCTTTTGtaatagaaaaaaaaaacatcttaaaaagaaataaaaacaaagaTCATACATTGCAAGAAATTAGACAAATGACTTTGATAATTGCAGCCATATAACGCTGACATCGACAGGCAGTAATTGATAGCATATTCATCCAAATGTACGCATTGTGTTACAAAACAATACTGTAAGTGCTCTTGTTGTTTCTGTCTTTCCATCGAATGTGATGTGGTGCAGTGTCTTAAAAACAGGATTGTTCATTTAACAAGCGAACATTTTTTTAGAAACAATTCTCAAACAACTCAATTTTCTTGCCAATAAAGACAGCTAAAGTAGAATCACCGTCAGTTGCTAGAATAATAGGTTATTAAGTAGTATTGACCAATCTTTGAAATAAGCCATCTTGagaaacaatatatatatattttttaaatagttttAACATACTTGAAAAAGATACTTGGAAAAGTTTGCTTGCTAACTTTCTAATCCTGCTTCACGAAACACTCCAATCTTCCAAAGGTTCCTATAGGCACTCAACTCAGGCCCTGAAAGGCCACAGTGTCTGCTGGCTGTCAATACCTATAGCTAGTCGCTACTAATTCTGAACTCCTTTCACTCCCTGCATTGTACTTCAAAGTGTAGAGTGAGGAGTACATGGGAGCCAATTCCCCATTTTCTTTGGGAAAAAGGAATTCTTTGTGAATGCAGGTAACTTTAAGGTACTTTTGAGCTAGCTTCTATCGATTTCATGTGTAGCAAGGtctacatacactaccgttcaaatgtttggggtcacttagaaatgtccttgtttttgaaagaaaaacttttttttttgtctattaaaataacatcaaattgatcagaaatacagtgtcgacattgttaatgttgtaaatgactattggagctggaaacagctgattttttaaatttaatatctacataggagtacagaggcccattatcagcaaccatgtgTTCAAATGGCACACTGtgatagctaatccaagtttatcattttaaaaggctaatagaTCATTGtaaaacctttttgcaattatgttagcacagctgacaactggggtgctgattaaagaagcaataaaactggccttctttagaatagttgagtatctggagcatcagcatttatgggttcgattacaggctcaaaatggccagaaacaaataactttcttttgaaacttttcagtctattcttgttctgagaaatgaaggctattctatgcgagaaattgccaagaaactgaagacctcgtacaacgctgtgtactactcccttcacagaacagcacaaactggcgctaaccagaatagaaagaggagtgggagggcccggtgcacaactgagcaagaggacaagtacattagagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattatatagtacccgcaaaacaccagtctcaacgtcaacagtgaagaggcgactctgggatgctggctttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaataaaagattaagataggCAAAAGAACTCAGACACTGGACACAGGAAgtttggaaaaaagtgttatggacagactaatctaagtttgaggtgtttggatcacaaagaagacAATTCGTGAGACTCAGGAAaagtgaagatgttggaggagtgcttgacgccatctgtcaagcattgTGGAGGCTATGTGACGTTCTGGGTGTGCTTTGgcggtggtaaagtgggagatttgtacagggtaaaagggatcttgaagaaggaaggttATCACCTCATTTTGCaatgccatgccataccctgtggacggcgcttaatggGAGCCAATTTCGTCACAGGACAaggacccaaagcacagctccaagcTATGCAAGAAccatttagggaagaagcagtcagcttgaattctgtctataatggagtggccagcacagtcaccggatctcaaccctattgagctgttgtgggagcagcttgactgtatggtacgtaagaattgcccatcaagccaatccaacttgtgggatgtgcttcaggaagcatggggtgaaattaacaaattgacaactagaataccaaaggtctgcaaggctgtaattgctgcaaatggaggattctttgacgaaagcaacgttttgaaggacacaattattatttcaattgaaAAATCATTCTTTCTAACcgtgtcaacgtcttgactatatttcctattcattttgcaactcatttcatgtatgttttcatggaaaacaaggacatctctaagtgaacccaaacttttgaacggcagtgtacCTCCAATAGCTAGCATGACGACTGATTATCAAACTGGCAGATTTTTTCCTAGACACATTTTGTCTTTTCTTTTTTAAAGTTGTTTGAAAACAAACGGTCAAAATTGAGACAGTTAGTTGGAAAGATAGCAGGGACCATTGCCAAAACGTATTAAATAACAGCACTCAAAAGATATTATAGCAGTTACTCAACATCTTCAATTGGCACTAACTGAGCAATGTCGGGCAGGgtagaattttttatttttttttgcccaCGCTACAGACTGCTATATAGGTCCACTAATACATGACTTGTAAAGGCCTACATTtgttaaacaaaaacaacaacaaaaaacgtttTCATAATGTAATTCCGATATTTCCAGAGGTACTGTAGTGCCCCTACTTCCCGCGGCTGTGGTAGCTGGCGATTAATATTACACTGATCAATTAAAGCAGTTTAATGAAAGTTTATAAATGGGCATCAACTTCCTCAAGTCCACATTGTTCAAATAGGAACTTGCCCCATGTGTGCTTTTCTAGAACCAGCTTGCCCTAGCTTCAGACCAACCTAAACTACTCAGCTTTACAAAAACTACACAACACGACACTGTGGCCTCCTATGTCCTGGTTAGCATATTTCTGCTGGGTGATACTCAACCGTGCCAAGGGTAGTAAGAATAACAACATTCACATCAACCTGTGATGTTCTTGATAAAAGCAGCATTAAATGGATACTGAGGGTTGTCCTCTCAGAACTTTTGCCCTTTCCTGAAAATCTGAAGATCTATATGGAATAGTCTACTCTAAAAATATGGGCTGGGGCATAAGAGTGGAGAAAatgagctgagagaaggagggaaggagagagagaagagatggattgGGGAAaggggacagagtgagagacatcTAGTGAGGGCAAAGACCATTCCAACTGTGCCAAGAGGAGCAGACACTCCAACTCTCCGGCCGAAACCATATGACTCATGACCTCTCTATACAGAGGTCACAGTTAAGTCTCTGGCTGCGTTTCATTCCAGGATGTTGCTCCCTCCCTTCTGTCCTTCAATGAAAGCCGAATATGGCGGAAACCAGGTGCAGGTATTTCTTACATTGTTGTGTCAGACGTGCGATATGCGAGTGAACTAAGAAAAAAAAGGGAGGAAACCACGTATTAGAATGAAACGCAACCCCGGCCAACCCAAACCCAGCCTGGAATCCCATTGGTCAGAATGCAGGCACAATTAAACCACAACCCCTGGTGGGTGTTTGTGCGTTACTTCAAAAATGCAATGCTTTTAGTTGAAAAAtactttacaaaaaaaataaaaaataccaaTGACTTCATTAGCTGTATAGTCTCCCAGTCTGCATGATGAGACATCTTTGAGGTAATCAAAGTGTTTCATTAGACAACAATAAATACCAACACATATTACAAAAGTAAAAAACAGAGGCAACTGCTTTAATGCTAAAGCATAATCTGTAGCTAAAAGAGGTAGATCATTGTTGTGTACATCCATTGTGGACACTCCTTTTAATGTTTGAAGAAGAACAAAATAAAAATCTACACGGCAAAATCAACGGTACTGTGTATCAATCCCTGTCACATTCAAAACGTTTATTGAAAGGCAATCTCACTCAATCAAAA
>TU1663740
TCGTTTATTATTTGATTTGCAAAACATCGGACAAAAATAACATTACATAAACACCCATTTATAATGTCTTTTGtaatagaaaaaaaaaacatcttaaaaagaaataaaaacaaagaTCATACATTGCAAGAAATTAGACAAATGACTTTGATAATTGCAGCCATATAACGCTGACATCGACAGGCAGTAATTGATAGCATATTCATCCAAATGTACGCATTGTGTTACAAAACAATACTGTAAGTGCTCTTGTTGTTTCTGTCTTTCCATCGAATGTGATGTGGTGCAGTGTCTTAAAAACAGGATTGTTCATTTAACAAGCGAACATTTTTTTAGAAACAATTCTCAAACAACTCAATTTTCTTGCCAATAAAGACAGCTAAAGTAGAATCACCGTCAGTTGCTAGAATAATAGGTTATT
>TU1663741
TCGTTTATTATTTGATTTGCAAAACATCGGACAAAAATAACATTACATAAACACCCATTTATAATGTCTTTTGtaatagaaaaaaaaaacatcttaaaaagaaataaaaacaaagaTCATACATTGCAAGAAATTAGACAAATGACTTTGATAATTGCAGCCATATAACGCTGACATCGACAGGCAGTAATTGATAGCATATTCATCCAAATGTACGCATTGTGTTACAAAACAATACTGTAAGTGCTCTTGTTGTTTCTGTCTTTCCATCGAATGTGATGTGGTGCAGTGTCTTAAAAACAGGATTGTTCATTTAACAAGCGAACATTTTTTTAGAAACAATTCTCAAACAACTCAATTTTCTTGCCAATAAAGACAGCTAAAGTAGAATCACCGTCAGTTGCTAGAATAATAGGTTATTAAGTAGTATTGACCAATCTTTGAAATAAGCCATCTTGagaaacaatatatatatattttttaaatagttttAACATACTTGAAAAAGATACTTGGAAAAGTTTGCTTGCTAACTTTCTAATCCTGCTTCACGAAACACTCCAATCTTCCAAAGGTTCCTATAGGCACTCAACTCAGGCCCTGAAAGGCCACAGTGTCTGCTGGCTGTCAATACCTATAGCTAGTCGCTACTAATTCTGAACTCCTTTCACTCCCTGCATTGTACTTCAAAGTGTAGAGTGAGGAGTACATGGGAGCCAATTCCCCATTTTCTTTGGGAAAAAGGAATTCTTTGTGAATGCAGGTAACTTTAAGGTACTTTTGAGCTAGCTTCTATCGATTTCATGTGTAGCAAGGtctacatacactaccgttcaaatgtttggggtcacttagaaatgtccttgtttttgaaagaaaaacttttttttttgtctattaaaataacatcaaattgatcagaaatacagtgtcgacattgttaatgttgtaaatgactattggagctggaaacagctgattttttaaatttaatatctacataggagtacagaggcccattatcagcaaccatgtgTTCAAATGGCACACTGtgatagctaatccaagtttatcattttaaaaggctaatagaTCATTGtaaaacctttttgcaattatgttagcacagctgacaactggggtgctgattaaagaagcaataaaactggccttctttagaatagttgagtatctggagcatcagcatttatgggttcgattacaggctcaaaatggccagaaacaaataactttcttttgaaacttttcagtctattcttgttctgagaaatgaaggctattctatgcgagaaattgccaagaaactgaagacctcgtacaacgctgtgtactactcccttcacagaacagcacaaactggcgctaaccagaatagaaagaggagtgggagggcccggtgcacaactgagcaagaggacaagtacattagagtttgagaaacagacgcctcacaagtcctcaactggcagcttcattatatagtacccgcaaaacaccagtctcaacgtcaacagtgaagaggcgactctgggatgctggctttctaggcagagttgcaaagaaaaagccatatctcagactggccaataaaaataaaagattaagataggCAAAAGAACTCAGACACTGGACACAGGAAgtttggaaaaaagtgttatggacagactaatctaagtttgaggtgtttggatcacaaagaagacAATTCGTGAGACTCAGGAAaagtgaagatgttggaggagtgcttgacgccatctgtcaagcattgTGGAGGCTATGTGACGTTCTGGGTGTGCTTTGgcggtggtaaagtgggagatttgtacagggtaaaagggatcttgaagaaggaaggttATCACCTCATTTTGCaatgccatgccataccctgtggacggcgcttaatggGAGCCAATTTCGTCACAGGACAaggacccaaagcacagctccaagcTATGCAAGAAccatttagggaagaagcagtcagcttgaattctgtctataatggagtggccagcacagtcaccggatctcaaccctattgagctgttgtgggagcagcttgactgtatggtacgtaagaattgcccatcaagccaatccaacttgtgggatgtgcttcaggaagcatggggtgaaattaacaaattgacaactagaataccaaaggtctgcaaggctgtaattgctgcaaatggaggattctttgacgaaagcaacgttttgaaggacacaattattatttcaattgaaAAATCATTCTTTCTAACcgtgtcaacgtcttgactatatttcctattcattttgcaactcatttcatgtatgttttcatggaaaacaaggacatctctaagtgaacccaaacttttgaacggcagtgtacCTCCAATAGCTAGCATGACGACTGATTATCAAACTGGCAGATTTTTTCCTAGACACATTTTGTCTTTTCTTTTTTAAAGTTGTTTGAAAACAAACGGTCAAAATTGAGACAGTTAGTTGGAAAGATAGCAGGGACCATTGCCAAAACGTATTAAATAACAGCACTCAAAAGATATTATAGCAGTTACTCAACATCTTCAATTGGCACTAACTGAGCAATGTCGGGCAGGgtagaattttttatttttttttgcccaCGCTACAGACTGCTATATAGGTCCACTAATACATGACTTGTAAAGGCCTACATTtgttaaacaaaaacaacaacaaaaaacgtttTCATAATGTAATTCCGATATTTCCAGAGGTACTGTAGTGCCCCTACTTCCCGCGGCTGTGGTAGCTGGCGATTAATATTACACTGATCAATTAAAGCAGTTTAATGAAAGTTTATAAATGGGCATCAACTTCCTCAAGTCCACATTGTTCAAATAGGAACTTGCCCCATGTGTGCTTTTCTAGAACCAGCTTGCCCTAGCTTCAGACCAACCTAAACTACTCAGCTTTACAAAAACTACACAACACGACACTGTGGCCTCCTATGTCCTGGTTAGCATATTTCTGCTGGGTGATACTCAACCGTGCCAAGGGTAGTAAGAATAACAACATTCACATCAACCTGTGATGTTCTTGATAAAAGCAGCATTAAATGGATACTGAGGGTTGTCCTCTCAGAACTTTTGCCCTTTCCTGAAAATCTGAAGATCTATATGGAATAGTCTACTCTAAAAATATGGGCTGGGGCATAAGAGTGGAGAAAatgagctgagagaaggagggaaggagagagagaagagatggattgGGGAAaggggacagagtgagagacatcTAGTGAGGGCAAAGACCATTCCAACTGTGCCAAGAGGAGCAGACACTCCAACTCTCCGGCCGAAACCATATGACTCATGACCTCTCTATACAGAGGTCACAGTTAAGTCTCTGGCTGCGTTTCATTCCAGGATGTTGCTCCCTCCCTTCTGTCCTTCAATGAAAGCCGAATATGGCGGAAACCAGGTGCAGGTATTTCTTACATTGTTGTGTCAGACGTGCGATATGCGAGTGAACTAAGAAAAAAAAGGGAGGAAACCACGTATTAGAATGAAACGCAACCCCGGCCAACCCAAACCCAGCCTGGAATCCCATTGGTCAGAATGCAGGCACAATTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1663739 False 4039 lncRNA 0.39 1 45251173 45255211
TU1663740 False 421 lncRNA 0.31 1 45251173 45251593
TU1663741 True 3637 lncRNA 0.40 1 45251173 45254809

Neighbor

gene id symbol gene type direction distance location
LOC110493949 LOC106565235 coding upstream 163424 45079606 ~ 45087749 (+)
LOC110493947 LOC106565236 coding upstream 181762 45063682 ~ 45069411 (+)
LOC110493946 LOC106565237 coding upstream 222081 44969478 ~ 45029092 (+)
LOC110493942 bin2 coding upstream 321017 44895963 ~ 44930156 (+)
LOC118940467 NA coding upstream 392902 44847117 ~ 44858271 (+)
trnaq-uug-4 NA coding downstream 98267 45353478 ~ 45353549 (+)
LOC110493956 LOC106565228 coding downstream 263515 45518726 ~ 45526398 (+)
e3 e3 coding downstream 312043 45567254 ~ 45572753 (+)
LOC110493964 LOC106565225 coding downstream 498558 45753769 ~ 45827044 (+)
dlgap4b LOC106565221 coding downstream 909267 46164478 ~ 46239382 (+)
G1454040 NA non-coding upstream 7857 45242965 ~ 45243316 (+)
G1454024 NA non-coding upstream 38011 45212841 ~ 45213162 (+)
G1454023 NA non-coding upstream 38436 45212537 ~ 45212737 (+)
G1453990 NA non-coding upstream 78177 45172790 ~ 45172996 (+)
G1453915 NA non-coding upstream 156889 45093095 ~ 45094284 (+)
G1454074 NA non-coding downstream 33180 45288391 ~ 45288620 (+)
G1454080 NA non-coding downstream 40961 45296172 ~ 45296377 (+)
G1454084 NA non-coding downstream 45924 45301135 ~ 45301478 (+)
G1454087 NA non-coding downstream 49258 45304469 ~ 45304717 (+)
G1454090 LOC106600457 non-coding downstream 51121 45306332 ~ 45306619 (+)
G1453914 NA other upstream 180248 45069971 ~ 45070925 (+)
G1453889 NA other upstream 200168 45050729 ~ 45051005 (+)
G1453605 LOC106565239 other upstream 396434 44835997 ~ 44854739 (+)
G1452804 LOC105896813 other upstream 730696 44513069 ~ 44520477 (+)
G1452399 NA other upstream 1644392 43606313 ~ 43606781 (+)
G1454049 NA other downstream 3264 45258475 ~ 45259571 (+)
G1454127 NA other downstream 80083 45335294 ~ 45336523 (+)
G1454824 NA other downstream 601038 45856249 ~ 45858501 (+)
G1456570 NA other downstream 1973008 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 2550147 47805358 ~ 47807518 (+)

Expression


Co-expression Network