G1454118


Basic Information

Item Value
gene id G1454118
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 45326321 ~ 45327491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1663814
tatatatatatatatatatatatatatttattgcaATTGCTTGGAAAACTGGGAGGGCAAAATCCAGTCTGCTGGTTGGAGAATCCTGCTGTAGAGCATCTATAGATGGACTATTCAAATAAAGTCTAtaataaaatatattatttacaaATTGTGACAGATAATACATATTTGGAAATATCCAGTTGAGATTAAAGGCATGCATTTTATACAGATGTAGTTTGGCTATGAATGCAAGTATTTAAAACAGATCAAATTAATTTACCTGGGATTTTGGCATGCCCTTTTTTGTAGATGGGCGATAAAGACTTGGCAACTCTCTTCTTAACCATAAAGATATCTTTAATCCTGAAAAATAAGAAATATGCTTAATCAATTCAGACCTTGTTTCAAACAGTTTGGTTGTTTGAATAATAGTCTTATCATATGTTCTCTGTAAAGAAAAGCATGACAATTATTTGAGCAACATGCGTGCAATGGTTTGATTGTAAAGATTATTTTGGTAAACTGACAGCCTTGTAACGCTGCGTTTGTTTTGAGCTCGAGCCGCAGAATAGTTTCAGCTTTCACATTCCTTCTCTGGATGCGAGTTTCATACCTGCGTACAACTTTTTCCAAGACCAAATTGCCCTTAATCCGTTTTGTCGTCGTCAATCtcttgaaaataaattcattccCATGTTGACTTGTGGTATGAGATACTGTGTAATAACTGCGTTATATAAATATCCGCATGTGATCGACTCGAAACGTCCAAACTATCACGCCCAAGGAAGGTTCTAAATGTTGGCTGGTGAGCTGATACTGATAGCTAGCGTGGCTAGATGGCTGGTTAACCCTAAATTGGTGTATCAAGTTCAGGCGATATATCAACTATATTCAGACCGAACGCGACTGCAATTAACGAATACGGCTAGTAATACTGGTTACGATGTTTACCTTGTTCGCTCTACAAACGGCGAATTCTATAGAATAGCTATGATAGACGAGAAATCCCCTGGCCAGACCCTAAATAGATGGCCATTACTTTTTGGTATGC
>TU1663813
TGCGTACAACTTTTTCCAAGACCAAATTGCCCTTAATCCGTTTTGTCGTCGTCAATCtcttgaaaataaattcattccCATGTTGACTTGTGGTATGAGATACTGTGTAATAACTGCGTTATATAAATATCCGCATGTGATCGACTCGAAACGTCCAAACTATCACGCCCAAGGAAGGTTCTAAATGTTGGCTGGTGAGCTGATACTGATAGCTAGCGTGGCTAGATGGCTGGTTAACCCTAAATTGGTGTATCAAGTTCAGGCGATATATCAACTATATTCAGACCGAACGCGACTGCAATTAACGAATACGGCTAGTAATACTGGTTACGATGTTTACCTTGTTCGCTCTACAAACGGCGAATTCTATAGAATAGCTATGATAGACGAGAAATCCCCTGGCCAGACCCTAAATAGATGGCCATTACTTTTTGGTATGC
>TU1663815
TGCGTACAACTTTTTCCAAGACCAAATTGCCCTTAATCCGTTTTGTCGTCGTCAATCtcttgaaaataaattcattccCATGTTGACTTGTGGTATGAGATACTGTGTAATAACTGCGTTATATAAATATCCGCATGTGATCGACTCGAAACGTCCAAACTATCACGCCCAAGGAAGGTTCTAAATGTTGGCTGGTGAGCTGATACTGATAGCTAGCGTGGCTAGATGGCTGGTTAACCCTAAATTGGTGTATCAAGTTCAGGCGATATATCAACTATATTCAGACCGAACGCGACTGCAATTAACGAATACGGCTAGTAATACTGGTTACGATGTTTACCTTGTTCGCTCTACAAACGGCGAATTCTATAGAATAGCTATGATAGACGAGAAATCCCCTGGCCAGACCCTAAATAGATGGCCATTACTTTTTGGTATGCCCCGCCCCCGGACTTCGACAAAATGGGATATTTTCTCCAAGCCTCTCCAATAACCAATCAAAGGTGTAATCTGCGTGTATCCCGTGTATCTCGTGTTTTGGTTGGTGACGGTTTACACCAGCCCTGCTTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1663814 False 1039 lncRNA 0.36 1 45326321 45327359
TU1663813 False 440 lncRNA 0.41 1 45326920 45327359
TU1663815 True 572 lncRNA 0.43 1 45326920 45327491

Neighbor

gene id symbol gene type direction distance location
LOC110493949 LOC106565235 coding upstream 238572 45079606 ~ 45087749 (+)
LOC110493947 LOC106565236 coding upstream 256910 45063682 ~ 45069411 (+)
LOC110493946 LOC106565237 coding upstream 297229 44969478 ~ 45029092 (+)
LOC110493942 bin2 coding upstream 396165 44895963 ~ 44930156 (+)
LOC118940467 NA coding upstream 468050 44847117 ~ 44858271 (+)
trnaq-uug-4 NA coding downstream 25987 45353478 ~ 45353549 (+)
LOC110493956 LOC106565228 coding downstream 191235 45518726 ~ 45526398 (+)
e3 e3 coding downstream 239763 45567254 ~ 45572753 (+)
LOC110493964 LOC106565225 coding downstream 426278 45753769 ~ 45827044 (+)
dlgap4b LOC106565221 coding downstream 836987 46164478 ~ 46239382 (+)
G1454116 NA non-coding upstream 2574 45323541 ~ 45323747 (+)
G1454105 NA non-coding upstream 5834 45320170 ~ 45320487 (+)
G1454104 NA non-coding upstream 6180 45319940 ~ 45320141 (+)
G1454102 NA non-coding upstream 9733 45316386 ~ 45316588 (+)
G1454100 NA non-coding upstream 12374 45313717 ~ 45313947 (+)
G1454119 NA non-coding downstream 827 45328318 ~ 45328613 (+)
G1454122 NA non-coding downstream 3273 45330764 ~ 45330963 (+)
G1454124 NA non-coding downstream 4390 45331881 ~ 45332102 (+)
G1454125 NA non-coding downstream 5904 45333395 ~ 45333614 (+)
G1454128 NA non-coding downstream 9104 45336595 ~ 45336798 (+)
G1454049 NA other upstream 66750 45258475 ~ 45259571 (+)
G1453914 NA other upstream 255396 45069971 ~ 45070925 (+)
G1453889 NA other upstream 275316 45050729 ~ 45051005 (+)
G1453605 LOC106565239 other upstream 471582 44835997 ~ 44854739 (+)
G1452804 LOC105896813 other upstream 805844 44513069 ~ 44520477 (+)
G1454127 NA other downstream 7803 45335294 ~ 45336523 (+)
G1454824 NA other downstream 528758 45856249 ~ 45858501 (+)
G1456570 NA other downstream 1900728 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 2477867 47805358 ~ 47807518 (+)
G1456969 NA other downstream 2506089 47833580 ~ 47839370 (+)

Expression


Co-expression Network