G1456250


Basic Information

Item Value
gene id G1456250
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47032820 ~ 47034863 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1666083
TGGAGAGTTTGTATTAGAAGGCAGAGAATCCTATAGGTTCTTTGGAAGCCATATGAAATACAACAGAAACTTGAATTCAACCGCAAGGTACACATACAGCTACTCTGAGCACAAGGATGCCAGGATACATATATGACTTACTATTCAAATTCGTACAGAGATGGCCAGTAAGAGCCATTCTCGTGTTTTCGTTGCCATCTTTGGTTAGAAAGTTTACATAATCCCCTTTCTATGTGTTACCTTATGAGGTTAGCATGATTATTTTACTGTAAAAGAAAAGTTAAAACGTCAAAGTAAAACAAATAATTGCATTCCAAAATGTAGATCACATTAACAGTTGCAGGACAAGCCCCAAAAGATTGCAACAAAACgtagacaaaaaaaaaagtatattttttcTGGTTAGTGTACCACTAACTCTGTGATTACAATCACAGTATAAAGAGACTCACTATCAATAGATATTGTATACACGATTAGGCTTTACACAACAGCATGTACTGTATAGTGAACGGTCAACTGATCAAGTCACAGAAAAGTCAAAGGTCCTTGGTTTGAAGCAGCAAAGTCACATGGGTGGATATAGACTTTCATAAGTAGACAGATTTGACCATACTGATAAGTCATCATAACGGCCAGAATTCTTTGGGACCTTTATGAGGTATTTTCAGCATTGTCCACTAATGTTGCTGCGGGTAGGAAATGTGCTGTAATTGACACAAGCTGTTTCCAATCAAAATCAATCAATGTCTGGTTGTGCGTGTGTGGCCGGGGAGGCGTAGCTCTGCTAATCTTAAAAATCGTACAAAACAGATTTGGCAGGGAATactatttgtagatcagtgattctaCACTTCACTTTGCTCATGCTGATCCTCTGCAGCACTCTCGGAAGTTAAAGCTTAGAACTTGATCAATTAGGGGCAGTTAAAAAGGGGAGAATCAATGACACCGGCTAACCCCCCCCAAGTTCATTACAATGTACTTCCATGGTTGGTTTCGTTgtctgtgtttacacagCCAAAGACCCTCCTTTAACTGACcctaattaaaaaataaatgcaaaaaTATCCGAGTCCATTGGAGAGGATTCGATCCACTTGAGAAAAATGAGGTGTAGAATCAATGATCTACAAATAGTATTCCCTGCCAAATAAAAGGCTTTGTGCAATTAAGAGTCACAGCACTACGGCTCCCATGTCTAAGGCGATCCTCccaccaaaacacacacgcacaacccGACATTGATTAGACAGCTTGTGTCAACTGAATAACATTTTCTAGGATTTCCTACGTGCAGCAAACCTAGTGGATAATGCTGGAAATAAATGGTTAAAGCACAACACCAGAAAAAGTGCCCCAAACTCCTTGCCCTAGTCATCACAACTACAAACATATTCCACAAAAGTGGAAATAAAAATTGTatagcattaaaaaaaaaatcattaaaagaGTTTTAGTTTAAAGTTACATAAAGCTATTAGCAGCAGTTAGTTTAAAGCTAAATCAAGTATTGCATGGTTCATAAAAGAGAGTTTAAAGGGTGTGATATAAAAGTATATGAAATACAGTACACTTAAGTAGAttatcttatccagagtgacatacaggagcaattagtgttaagtgccttgctcaagggcacgtcgacagatgtttcacctagttggcacgtggattcgaaccagcaacctttcagttactggccctacgctcttaaccgctaggctacctgccacttatATACAGTAGCTAAAGTTAAGAACAGATTTTTCTCCTTGACCACATTACTGCATTATTGGTTCTTTAGAAAAAGAGTATTAAAAAAAATTGAGTAAAATTGTATCATCGTTTCCCTAAATACTGTGGCTTGACCCCTACTTCAGCTGAGGGGAGGCAAAAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1666083 True 1906 lncRNA 0.38 2 47032820 47034863

Neighbor

gene id symbol gene type direction distance location
LOC110493976 plxna1 coding upstream 230618 46512678 ~ 46802202 (+)
LOC110493975 chchd6 coding upstream 596294 46376260 ~ 46436526 (+)
tpra1 tpra1 coding upstream 656833 46363032 ~ 46375987 (+)
LOC110493973 LOC106565216 coding upstream 671786 46353930 ~ 46361034 (+)
LOC110493972 LOC106565215 coding upstream 686662 46302413 ~ 46346158 (+)
LOC110493980 LOC106565205 coding downstream 74860 47109723 ~ 47134585 (+)
LOC110493981 cytl1 coding downstream 100301 47135164 ~ 47136870 (+)
LOC110493983 LOC106565202 coding downstream 252064 47286927 ~ 47308189 (+)
lyar lyar coding downstream 293439 47328302 ~ 47341231 (+)
LOC110493987 LOC106565200 coding downstream 317369 47352232 ~ 47361786 (+)
G1456220 NA non-coding upstream 48464 46977369 ~ 46984356 (+)
G1456151 NA non-coding upstream 128633 46903926 ~ 46904187 (+)
G1455891 NA non-coding upstream 274324 46735866 ~ 46758496 (+)
G1455863 NA non-coding upstream 366559 46665988 ~ 46666261 (+)
G1455854 NA non-coding upstream 370522 46662084 ~ 46662298 (+)
G1456286 NA non-coding downstream 49104 47083967 ~ 47085592 (+)
G1456287 NA non-coding downstream 55056 47089919 ~ 47090211 (+)
G1456290 NA non-coding downstream 60276 47095139 ~ 47095345 (+)
G1456291 NA non-coding downstream 61381 47096244 ~ 47096466 (+)
G1456293 NA non-coding downstream 64102 47098965 ~ 47099165 (+)
G1454824 NA other upstream 1174319 45856249 ~ 45858501 (+)
G1454127 NA other upstream 1696297 45335294 ~ 45336523 (+)
G1454049 NA other upstream 1773249 45258475 ~ 45259571 (+)
G1453914 NA other upstream 1961895 45069971 ~ 45070925 (+)
G1453889 NA other upstream 1981815 45050729 ~ 45051005 (+)
G1456570 NA other downstream 193356 47228219 ~ 47228796 (+)
LOC100135862 LOC106565314 other downstream 770495 47805358 ~ 47807518 (+)
G1456969 NA other downstream 798717 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 996051 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 1354219 48389082 ~ 48424478 (+)

Expression


Co-expression Network