G1456670


Basic Information

Item Value
gene id G1456670
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47376782 ~ 47378517 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1666536
acacacacacacaaatatcccTGCTCTCCACGTACTGAAGTAACTGCACAGTAGGCAAAGCATTCTCAATCGAATTATGCACCTGCAGTAGCAGACCTCTTATAGGCTTGACTTTACCCATAATAAACCCACACCGGTCCAAAGCTAATTAGGAACTTCCTTTGAGTGATTATGGCGAACACCTGCCAAGTATGACGAGTttacggccaggtaccacacccTAATAGGGTAACCCCCCCTACAGTTGAAAGTGCACacaattataatatttttttgtatatattttattaaaataCGCAAAGTAGGTGGCCTCGTTAGATATTTCGCATATCACGGAAATCCATTTTTCTGGACACTGAATGAAGTCGGCCtaaatattttggtttcattttgTTACAACTCCAGGATCGGTATGTAAAATAAATATTGGCTCATTTTTCAGAAGAAAATGTAATCTAGAAGAAACATTTGGCAACATATCAGCAATTCCCTATGCATAAGTATGGAGAATACGTCTAAGGATAACCACACACAATTTGGTGAATGCAGATGCGTCTGAGGCTGAAAAAAATGAGTTAGCATGTGGGAAGGGTCGGACTTTCGGGAAATGGCAGTTAAAGACAAGTAGACTGAATTTAGCCtaccaacccactgggcacagatacCAATTCgccatctattccacgttggttcaaggtaatttaattgaaattacgttgaaacaacgttgattcaaccaatgTGTGCCCATGAGAAACGCCAAACACCGACATTATTTAGACCCAATTACCATCTCTTCAAAATAAGTTACTACATACAGTCCAGTTTGTAATATTGTCTATGAAATGGGTTTTTATTAAATTATGTGTGATTCAATGTTGTGAGCTTTGCAAAACTTATGATGGTAGTATGGTAAACTAACGAAAATATAAATTTTCCTCAACCTATTTTTACTTTTTAGAAATACTAATATTATTGGACTAAAATGCAAAAAAATCTCAATTGCTAGGTAGattaaaaaatgtaatttcagTTTGTGGTGCCTGACCTTAAGGGATATTATATTCTACCTCTCTCTATTTGGTGAGAAAAATGGCCAAGACATACAAATCCAACCACTCTCCATTCTCTATCATACAGCATCCATGTTAAGAAGTCCACCAAACACCATTCGTAAAGCTCATTCCCACTTGAcaaacactggttgaatcaacacaGTTTCCATGTCACTTCAACCCCACAAATCTATGTGATAACGTtgaatgtggaaaactgattggatttgcaacaAGTAATAAACATAAGggcatttcatatttttattcaCCCACATTTGAACCTAAAGCCAATGACATGGTgcattttctgtttttattttcacAGTTGAATTCAccttagttgacaactcaaccaaatgtaaatcaaaactagatgttgaccTGATGTCTGTGCCATGTGGGTTGGCTCTATGAATCTCCCCAATTCCCAGTTAACAATCAGCTTTTCAAGATCACATAATATGTGATATGACATACTATGTAAACAAATTAATCAACAATTATGTGCAATGGGGTAATACAAATCTTGGTGTGAAATTCCACAGTGGGACCATGGTCAGcttgatttaatttaatttgagtTACTTTACATATTTTGAAAATGTACAGATGATATTTCATGTATACTGCCATCCAAACAGTGAAGTGTGTCACCATTTTGCAATAAAATACTCTCTA
>TU1666538
ATGGTAAACTAACGAAAATATAAATTTTCCTCAACCTATTTTTACTTTTTAGAAATACTAATATTATTGGACTAAAATGCAAAAAAATCTCAATTGCTAGGTAGattaaaaaatgtaatttcagTTTGTGGTGCCTGACCTTAAGGGATATTATATTCTACCTCTCTCTATTTGGTGAGAAAAATGGCCAAGACATACAAATCCAACCACTCTCCATTCTCTATCATACAGCATCCATGTTAAGAAGTCCACCAAACACCATTCGTAAAGCTCATTCCCACTTGAcaaacactggttgaatcaacacaGTTTCCATGTCACTTCAACCCCACAAATCTATGTGATAACGTtgaatgtggaaaactgattggatttgcaacaAGTAATAAACATAAGggcatttcatatttttattcaCCCACATTTGAACCTAAAGCCAATGACATGGTgcattttctgtttttattttcacAGTTGAATTCAccttagttgacaactcaaccaaatgtaaatcaaaactagatgttgaccTGATGTCTGTGCCATGTGGGTTGGCTCTATGAATCTCCCCAATTCCCAGTTAACAATCAGCTTTTCAAGATCACATAATATGTGATATGACATACTATGTAAACAAATTAATCAACAATTATGTGCAATGGGGTAATACAAATCTTGGTGTGAAATTCCACAGTGGGACCATGGTCAGcttgatttaatttaatttgagtTACTTTACATATTTTGAAAATGTACAGATGATATTTCATGTATACTGCCATC
>TU1666542
ATGGTAAACTAACGAAAATATAAATTTTCCTCAACCTATTTTTACTTTTTAGAAATACTAATATTATTGGACTAAAATGCAAAAAAATCTCAATTGCTAGGTAGattaaaaaatgtaatttcagTTTGTGGTGCCTGACCTTAAGGGATATTATATTCTACCTCTCTCTATTTGGTGAGAAAAATGGCCAAGACATACAAATCCAACCACTCTCCATTCTCTATCATACAGCATCCATGTTAAGAAGTCCACCAAACACCATTCGTAAAGCTCATTCCCACTTGAcaaacactggttgaatcaacacaGTTTCCATGTCACTTCAACCCCACAAATCTATGTGATAACGTtgaatgtggaaaactgattggatttgcaacaAGTAATAAACATAAGggcatttcatatttttattcaCCCACATTTGAACCTAAAGCCAATGACATGGTgcattttctgtttttattttcacAGTTGAATTCAccttagttgacaactcaaccaaatgtaaatcaaaactagatgttgaccTGATGTCTGTGCCATGTGGGTTGGCTCTATGAATCTCCCCAATTCCCAGTTAACAATCAGCTTTTCAAGATCACATAATATGTGATATGACATACTATGTAAACAAATTAATCAACAATTATGTGCAATGGGGTAATACAAATCTTGGTGTGAAATTCCACAGTGGGACCATGGTCAGcttgatttaatttaatttgagtTACTTTACATATTTTGAAAATGTACAGATGATATTTCATGTATACTGCCATCCAAACAGTGAAGTGTGTCACCATTTTGCAATAAAATACTCTCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1666536 False 1736 lncRNA 0.36 1 47376782 47378517
TU1666538 False 783 lncRNA 0.34 1 47377691 47378473
TU1666542 True 827 lncRNA 0.34 1 47377691 47378517

Neighbor

gene id symbol gene type direction distance location
LOC110493989 LOC106565315 coding upstream 82 47374636 ~ 47376700 (+)
otop1 LOC106565199 coding upstream 4201 47365071 ~ 47372581 (+)
LOC110493987 LOC106565200 coding upstream 14996 47352232 ~ 47361786 (+)
lyar lyar coding upstream 35551 47328302 ~ 47341231 (+)
LOC110493983 LOC106565202 coding upstream 68593 47286927 ~ 47308189 (+)
idh3b LOC106565197 coding downstream 349907 47728424 ~ 47743582 (+)
LOC110493993 LOC106565195 coding downstream 365839 47744356 ~ 47790013 (+)
LOC100135862 LOC106565314 coding downstream 426995 47805358 ~ 47807518 (+)
LOC100136222 LOC100136222 coding downstream 436374 47814891 ~ 47818587 (+)
LOC118940470 NA coding downstream 450198 47828715 ~ 47833280 (+)
G1456668 NA non-coding upstream 3969 47372689 ~ 47372813 (+)
G1456597 NA non-coding upstream 129630 47246876 ~ 47247152 (+)
G1456539 NA non-coding upstream 177197 47199377 ~ 47199585 (+)
G1456293 NA non-coding upstream 277617 47098965 ~ 47099165 (+)
G1456699 NA non-coding downstream 36095 47414612 ~ 47415612 (+)
G1456708 NA non-coding downstream 47738 47426255 ~ 47478036 (+)
G1456818 NA non-coding downstream 195815 47574332 ~ 47610240 (+)
G1456912 NA non-coding downstream 320522 47699039 ~ 47699475 (+)
G1456916 NA non-coding downstream 322822 47701339 ~ 47701574 (+)
G1456570 NA other upstream 147986 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1518281 45856249 ~ 45858501 (+)
G1454127 NA other upstream 2040259 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2117211 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2305857 45069971 ~ 45070925 (+)
G1456969 NA other downstream 455063 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 652397 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 1010565 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 1314804 48693321 ~ 48814670 (+)

Expression


Co-expression Network