G1456883 (LOC106565198)


Basic Information

Item Value
gene id G1456883
gene name LOC106565198
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47713943 ~ 47714747 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1666775
CGTCTGGACCCACCTGTACTCTTTCTTGGTCACGCTGGTGAAGCGAACCGTGTCGTCCATGCTGCAGGTCACCAGCTGGTCAGCATCGTCCACAGCCATCTTGGTGACCAGGTTGCTGTGGCCCTTCCCTGAGAAGTCGTTGTTCTCCCCGGTCTCAGCGTCCCAGATATTGATGTGCCCGTCATGGCTGCCCGAGTAGATGTAAGAACGCCCCCCGTTTTTGTGAACCGTCAAGGACTGAATGGATTTGCTGTGACCCTGTAAGGCACATGATAAAGAGAGACGTATTGTTGAGCACCCAGTCATCAAATGATTAGTGGAGAAGAACATTCATTCAGTTGGACTCAAAACCATCAGTTGTGACACTTTCGGTTCGGGCACGATTTCAGCATTTC

Function

NR:

description
WD repeat-containing protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1666775 True 395 lncRNA 0.52 2 47713943 47714747

Neighbor

gene id symbol gene type direction distance location
LOC110493989 LOC106565315 coding upstream 337243 47374636 ~ 47376700 (+)
otop1 LOC106565199 coding upstream 341362 47365071 ~ 47372581 (+)
LOC110493987 LOC106565200 coding upstream 352157 47352232 ~ 47361786 (+)
lyar lyar coding upstream 372712 47328302 ~ 47341231 (+)
LOC110493983 LOC106565202 coding upstream 405754 47286927 ~ 47308189 (+)
idh3b LOC106565197 coding downstream 13677 47728424 ~ 47743582 (+)
LOC110493993 LOC106565195 coding downstream 29609 47744356 ~ 47790013 (+)
LOC100135862 LOC106565314 coding downstream 90765 47805358 ~ 47807518 (+)
LOC100136222 LOC100136222 coding downstream 100144 47814891 ~ 47818587 (+)
LOC118940470 NA coding downstream 113968 47828715 ~ 47833280 (+)
G1456888 NA non-coding upstream 4177 47707696 ~ 47709766 (+)
G1456889 NA non-coding upstream 8018 47704632 ~ 47705925 (+)
G1456916 NA non-coding upstream 12369 47701339 ~ 47701574 (+)
G1456912 NA non-coding upstream 14468 47699039 ~ 47699475 (+)
G1456818 NA non-coding upstream 103703 47574332 ~ 47610240 (+)
G1456920 NA non-coding downstream 13048 47727795 ~ 47728035 (+)
G1457051 NA non-coding downstream 262187 47976934 ~ 47977139 (+)
G1457091 NA non-coding downstream 361619 48076366 ~ 48076682 (+)
G1457093 NA non-coding downstream 372858 48087605 ~ 48087822 (+)
G1457137 NA non-coding downstream 485294 48200041 ~ 48200356 (+)
G1456570 NA other upstream 485147 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1855442 45856249 ~ 45858501 (+)
G1454127 NA other upstream 2377420 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2454372 45258475 ~ 45259571 (+)
G1453914 NA other upstream 2643018 45069971 ~ 45070925 (+)
G1456969 NA other downstream 118833 47833580 ~ 47839370 (+)
glrx LOC106565191 other downstream 316167 48030892 ~ 48036585 (+)
LOC110494013 LOC106565177 other downstream 674335 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 978574 48693321 ~ 48814670 (+)

Expression


Co-expression Network