G1456969


Basic Information

Item Value
gene id G1456969
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 47833580 ~ 47839370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1666865
aagctacatctttttttattcaaatgtttTGTTTACAAGCACTTGACATCTATTGAAATTCTACTCTACAAGCGTCCAAGGCTGTTGCACTCAAAAAACAGCCAATATCAGAGGAAGCAGCGTTGTAAAACTTAACTAAATGTAAAAACTATGGAGCTGCTTTGCACAAGATAAAGATTTTCCTAATATTGCATGTGAAATCctttctaaaatatattaaaaagtATTCTCTTTCCTGCAACAAAATATACAGTAGGTTCCCTATACCAAATTACCCTCTTGTGTATTCTACTAGTCATTAATTGTTTTTGTCATTTTCTTATTGCCATTTTATAGGGCAAAGTACATTTAGGCTACCCCATGTTAGCTTCaacatgtttgtttttctgtTGTTGAGGCACAAGCAGTTACTACAGACACTTGAATACACACAGCAAACCAattatttttgacatttttattAAATTAGAATTCCCATTTCCAAAATATCTCTCAAGTTTTGAGTTTGAGACCTGCACCGAAATACTGTATGTAGAATTCTGTCATACCAGCTTTTGACTTTTTGAGTAGAAGTGATAGCTCTTGGGACTGTTTTACAGTATACAAACAAAGGCAGTTTACAGAGGTAGTGACCACCCAAGTTTACTTGTAAGTGCACTTTCGGAAACCAATACATGCTTCTACGAGGCAAAGTACACACATATAGACCCTTCTGTAAAGCGATATCTATCAAGAAAGTAAATATATAGTATTGCATGAGCTATCAGATGCATCCGTACCAAGCAGATCACTTCCTGTAAATCCTTTTACACATTTCAATATTGTAAACTAAGTATTATCATCAAACTAAGCAAGACTATGCTGTACGCTAGTGTCTTATGTTGGCTGTCCACATAATAGAAAACATGCTTTTCTGTGTACAGCAAGATTGCAAAGACATCACAATCCTATATACCCACTATACACTGTTCCTAAACCCAGATCACGCTCACTATTACCCAACATTGTAGCaatgttgaagcaacatcactGCAACATTGGGGCAATACAGACTGTTAGCTAGGGCAACACCTCCATTTTATTTTTCTCACAGGATTGGACAGCTGCTCTGTCATTCATGAGGAATAAATTacaacaaactctctctctcaccttctctctctcactctctctttatttTGCTCTCCTCATCTCAAAGGAAAGAAACCAAAACAAGTACAATCTTCTGTCATGTGCGAAACCAAGCAGGAAAGGCATTGCACacagcatgtgtctgtgtgtgtgtgtgtgtggtcatgttTGTTTTTCATCCAGTATACATTCTCCACCATTTAGAAAAATAGAATCATCGTTCACAGCAGCTCCCTCTAGTGGCGCCTCCATGTGGCAGGGGACATGTAGTGCGCTAGAAACCTATTTTTGGATCCTGGCACTACATCTGAACTCATCTTTCCAGACAGGTGGTCTTTGGCTGATGGGTTCTCCTCCTGTTGTTTCTGAGAcaaaaggtcaaaggtcaagtCAATTAGAGGACATTTATATCAAATCACATGAATATGGGCATGTATCTCAAATGATTATTAGGATCTAATTTCATTTGGTTTTCTTAAGGTCTAGTTCTTACCTTTGACTTAGACCTTGACTTGCTGTTACTCTGCAATAAACAAAATTGACACCTTGTTCAGTGTGGATATAACTTCAGGGAGGGCTATGGTAAAGTGATACGGGAGACTTGTAATACGTCTCAATAAGACTAGAGGGCGCTGTAAGACAACCAACAACCATATCTGTTGCTCCATAACCAGAGAATCAATGGCAAGTTCATCTTCCAGTggaagctggtgggaggagctataggagctattgtaatggctggaatggaattcatggaacggagtcaaacatgcgGTTTCAATATGTTTGATACCGCTCcgtttattccattccagcccaTCCTCCTAGATAATGAGCCCCTCCTCCTATCGCTCTtcctaccagcctccactgttgtaGGTTAACTTTTCTACTATGGggaatagtagattgacataggctagtgattttgctgttcgttactcatcttgttggctgaggataagtaaatgtggacagtaaGTATAACATCTTCAAAGTGCGCATCAGAATTAGGTTAGAAGGATCACAAATCATTGCATCCTCGACTTGCCTGTTCTGTTAGAAAtaattaccataatctaaatgggatttctgtcattctgagcatcGTGGGTGGACggccctaatcaggttacgcacCCAATGGGTACGGGTAATGCATAATATGCTAAGTATTTTTGCAAGGTGTCATGCATATGAACTCAAGATAGTTTTTTATTGTTACAGAGCAGACATCATCATGCCCTGTCTATACAAACGTAAAACAAGCAGGCCCCCTTGGAGGTTCTTGAAAGAGCAGCCAAGGAAGTAAGAGAAGAAGTCCATTTGAGCAGCAGCAAGTGATGAAAAAAAATAGACTGAATGACACTGAAGAAGTACattgacaaaaaaaagaaaagaaagatgAACATGTACCTGTGTGAAAGAGAGGCCATGATAGTGTAGCAGAGGCACATAAAGGTCTTATCTGATaatgacatggagtctgagctaaaaaaaaaatatcaagaATTTTGCAGACCAGCTTCATGGGCTTAGTAGCCTCAAATGCAGAGAGCGTGCAAGGGAGCAACATCTGGAGAGTGCGTGACGCACATGCATTCGGTAAGTCTgtataccaactactgagaagtgcttAAATCAAAACGCGTCAAAAAAGTCTGAATCGGGCCCTGTGTACGTACCTCCAGACTGGGCTGTGTCTGCTTTGTTGTTGCAGCAGGACAAGGTGAGGAAGAGAAGTCGCTAGACAAGAGGTCGAGGGCACTGCTGTCATCCATAGATGGCTTTAAGGTAGGAGGAAGAAGGGTCACAAGTGTACATACGGTTTACTTGAATTCAATATGACTTTTATGAGTGGCACTGTGTTCAACACAGTACGACATTGAATACGACTGATCTGTGCGATTATAGATACAATTGGACAGAAACGCTACCTGCTTGGGCCTAACATCCGCCTGGGTTTTGGCCTCTGCCTTTGCCTGTGAGGAGAAAAGACACAAAACCTGTAAAATATACAGCCTTACTTAcacctggggtggcaggtagcctagtggttagagcggtgggccagtaactgaaaggttgctagatcgaattcctgagctgacaagttaaaaatctgtaattatgctcctgaacaaggcagttaacccactgttcctaggccatcattgttaataagaatttgttcttaacttacttggtTTTTGCATATTTTCGATAGAAGAGCGTAAAAATAACGTAAGGGCcgtttactaccattttatttgGTGTATTGCATTTTTACCACgtattagcgttagcatttatgCTATCATTAGCACATTACATTAGCATCTTCAGGAATACCCCTTTTATTTCCTACTACAACCCTGTATATGTTACCTTAAGGTCTTTCTCTGTGTGCCGGTACTCAGCTGGAAGGCTgacatctctctcccccatcttgaTAAGCTTCTCCTCCATGATCTTCTTCTCCTAGAATAAGCAGAGAGCAGACTCAGGTAAAACAACAGATATCATTAGCATTAGCTCATATAGGCTAAAGGTTTCACTGCAGTGAGGTAAGGCTTATTTTTTTGACCAAGGAATAGCCTTAAACAGTTGTATTGCACAAGAGTGAATTTCCAGTCGGTCACACTTTAAACTAAATACATCATGTGTAGGCTTAATGAAGCCTTCATATCACTCTTTATAAGTACCTTGACGATGTCCCTGACAGAGACAGGAACGGGCTCTGGGATAGGAGTCATGTTCACTAAGGTGTCTGACAAGGCATCCAGAGCATCTACCGTCCCTGtagacagctacacacacacacggttacatGTCACTGCTGACAATGGGTATCTGACTGAGCCACTAAATGTGAATTAGGCATAGGACAACAATAAtctcacattgtgtgtgtgtgtatcagtaccTGGCGGTTAGCAGCAGATTTGACTGCAGGGGCAACAGCTGGAGTTACAAATTCCCCTGCCAGGGCATCCAAGGCAAAGTCATCTGTGGCCTACAGAcacaaaggaggagaggagagatggagggaaaatgTATATGTTAAGTGAGTTGTTCTGCTACCGATGAAAAACGAAGAGACTCTTAAAGCAACCAGACATAAAAACACGTATTGGCTGGTCATAGTTTTATAGAGAGCAGATCAATCACTGGATGGTTTGATAAGTGAGTGACCAATGGTAGAGGGTGTTGTTCACCTGTGTTGGGCGAGCTGGGGGGCAGAGGACAGGAGCCTGGACAGTTGGAGCCACAGAGGAAGACATGAAGTCACCTGACAGGATGTCCAGAGCCTCACCTGAGTCCATggagggctggggagagagagagagagagagagagagagcaggggaggagcggacgggagaggatagggaggagaagtgaagagaggaagaagagacatAGTTATGATTATCAAATTCCCTTACACCAATAACTCCTGGTTATCTTTAGTTCTGTTTCTTCTCATAGTGAAAAGTAATGTATTTTTTGATCTCCCAATGACCTGTGCTTTGCGTAAATGAGGCTCACCTCTATCTTGGGAGGAGGCAGGTCTTTGCCTTTGTCCTCTGTGAACCTGTACTCTGGTGGGAGAGTGTCATCCCTTTCACCCACAAGCACAGCTTCCATCTCTGTCAGTTTGCCCTCCTATACAGCACATGCAAAAAAACACacgtgtatatacacacacacacaacagagctGAAATGAATTCTATCCTTAAAAAATGTCACTGGGACTGCTAcactatgtactatactgtaagctAGTCATTGTAAGAATTtaatataataactttattgttCAGTGTATGTATACCGTGACAATGTCCTCAGGTCTGATCTTGGGAGGTTCAGGCGCTGGTTCTGGAGCAGCCAGAGTGTCTCCCAGAGCACTGAGAGCATCCAGGGACATAccctggagagagacacacacacacacacacacacagggatcaGCTGTGTGCAGGGACTTTTTTTCTTCAGTTGAGTCTCTTACTGCGCCTTAGATTTCTCCTGTGTCTACACGTAGCGTGGTTACCTCATCAGTGGTGGTTTTAGTAGGTGCTGCGGGTTTAGTAGTGGCAGCGGGTTTAGTAGTGGCAGCGGGTTTAGTAGTGGCAGCGGGTTTAGTAGTGGCTCCGGGTTTAGTAGTGGCTCCGGGTTTAGTAGTGGCTCCGGGTTTAGAAGTGGCTCCGGGTTTAGTAGTGGCTCCGGGTACAACAGGGGCCATGCTGGGGGCTTCAAGGTCAAATGTACAAACGGCTTTCTATAGACAGGAGCAAAACACATACACATATGATATGACCTGACAGTACGCAGGGTATACTGtacatatgcatacacacaccaTGACCCGACAGCCGGCAATACACAAGGTACACGCACACCTACACAAGC

Function

NR:

description
calpastatin short variant 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1666865 True 5555 TUCP 0.42 2 47833580 47839370

Neighbor

gene id symbol gene type direction distance location
LOC118940470 NA coding upstream 300 47828715 ~ 47833280 (+)
LOC100136222 LOC100136222 coding upstream 14993 47814891 ~ 47818587 (+)
LOC100135862 LOC106565314 coding upstream 26062 47805358 ~ 47807518 (+)
LOC110493993 LOC106565195 coding upstream 43567 47744356 ~ 47790013 (+)
idh3b LOC106565197 coding upstream 89998 47728424 ~ 47743582 (+)
LOC110493995 LOC106565194 coding downstream 99576 47938946 ~ 47971144 (+)
LOC110493996 LOC106565313 coding downstream 141611 47980981 ~ 47985604 (+)
LOC110493997 LOC106565193 coding downstream 161900 48001270 ~ 48026662 (+)
glrx LOC106565191 coding downstream 191522 48030892 ~ 48036585 (+)
ubap1 LOC106565187 coding downstream 264167 48103537 ~ 48147244 (+)
G1456920 NA non-coding upstream 105545 47727795 ~ 47728035 (+)
G1456883 LOC106565198 non-coding upstream 118833 47713943 ~ 47714747 (+)
G1456888 NA non-coding upstream 123814 47707696 ~ 47709766 (+)
G1456889 NA non-coding upstream 127655 47704632 ~ 47705925 (+)
G1456916 NA non-coding upstream 132006 47701339 ~ 47701574 (+)
G1457051 NA non-coding downstream 137564 47976934 ~ 47977139 (+)
G1457091 NA non-coding downstream 236996 48076366 ~ 48076682 (+)
G1457093 NA non-coding downstream 248235 48087605 ~ 48087822 (+)
G1457137 NA non-coding downstream 360671 48200041 ~ 48200356 (+)
G1457153 NA non-coding downstream 426594 48265964 ~ 48266185 (+)
G1456570 NA other upstream 604784 47228219 ~ 47228796 (+)
G1454824 NA other upstream 1975079 45856249 ~ 45858501 (+)
G1454127 NA other upstream 2497057 45335294 ~ 45336523 (+)
G1454049 NA other upstream 2574009 45258475 ~ 45259571 (+)
LOC110494013 LOC106565177 other downstream 549712 48389082 ~ 48424478 (+)
bsnb LOC106565168 other downstream 853951 48693321 ~ 48814670 (+)
erc2 LOC106583361 other downstream 1083437 48866589 ~ 49040356 (+)
G1458807 NA other downstream 1599636 49439006 ~ 49439329 (+)

Expression


Co-expression Network