G1457188


Basic Information

Item Value
gene id G1457188
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48456820 ~ 48472295 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1667104
TAGCAGACAAAATGTTGTACAAAGTTGGCCTTCTTCCGTTGACTGCTTTGAGTCATCTGTACAAAACACGAGGTGACATGGACGACTGCGCACAAGGAGAGGAAACGCTGTCCCAAGCAAACAACAACAATAGCAGCAAACCAAACCAAAAGTACAGAAAGACATTAAACATTCATATTATTTCATAGCCTAATAAATAAAACGATAGGAAAGCTGTTACGGGCTTTTTTGAATAAACTGAAGTTAAAATGCCCATCCCCCATATTTTTCAAAAACATTCAACGTTCTTTAAATTTTGCAATAAACAAACTGCCCATTGAGTTCATTCTCACAATCAATGCTATTACCTAATGTATAACAGGTAATATGAAGCATACTCAAAAGTCAATCAGAGGTCATCGACCAAAACCCCCACATGCCTATCAGATTCTCACAACACTCATAGTGTAAGGTAACTCTGGTCCAGAACATTGTTTGGCTGCGATCTCAAAGCTGAATGACGCCCTGGACCAGAGTTAAGTGTAAGGTGGCACCCATTGGGAAATCCTCACGGAGTGGGAGAGTGCTTAGGCTACTCACGTTCACCTGTAAAGAAATGTCAAATACTTTTTATTACTAGTTTATACATCAATCTGGAAATGTTCCATAAAATCATGCAATAAGTAgaacaaAAATACATCTTTGGAATATATTTTAcgcatttttttatttatatatttactaTATGTTCATGTAAAATTCACAAAAACAAAATGTACTGTATCAGTTGATAGCAACGGTCCACTGTACTTTTGttacagtgttgttgttttttaaaatctctCAATCACTTCTTATTTGGCTTTTGGAAGCACTTTTAGAACATATTTAGCATTGATGCTAACTAACATCTAAGTCAATAAAATATTTGTCATAACATCCCTTTATCACACATTCAAATGAagtgattttttttaaaggatatggatgatttaaaaaaaaatccatatctcaCACTTGGGGCAATTTACTGTCATCAAAATAAGAGAATCTCTCTTCTTTTCAAGTGGCCTGTCATATGAGACATGCAATggcaatgcagagagagagattaagggaAATCACactagagaaagggagaggaaagaggaaattGGAATtatgagaaaaaaaaactgttttggcAGAGGTCAATCCCCGACCAGAAGTGGATAAAGAAATGTTGAAGAACAAAGGGAAGAGTAAGATAATGGATGTCAGGAGATAGTGGATGATGACTGTGGTAATGGTCTAGTccaggtgtcagagagagagaagagtcagGATCAGCTGGATAGAGAAAAGGATTCCTATTGAAGATTGTAGGGAATGGCCTCTCCCACACTCCGATGTGTT
>TU1667105
TAGCAGACAAAATGTTGTACAAAGTTGGCCTTCTTCCGTTGACTGCTTTGAGTCATCTGTACAAAACACGAGGTGACATGGACGACTGCGCACAAGGAGAGGAAACGCTGTCCCAAGCAAACAACAACAATAGCAGCAAACCAAACCAAAAGTACAGAAAGACATTAAACATTCATATTATTTCATAGCCTAATAAATAAAACGATAGGAAAGCTGTTACGGGCTTTTTTGAATAAACTGAAGTTAAAATGCCCATCCCCCATATTTTTCAAAAACATTCAACGTTCTTTAAATTTTGCAATAAACAAACTGCCCATTGAGTTCATTCTCACAATCAATGCTATTACCTAATGTATAACAGGTAATATGAAGCATACTCAAAAGTCAATCAGAGGTCATCGACCAAAACCCCCACATGCCTATCAGATTCTCACAACACTCATAGTGTAAGGTAACTCTGGTCCAGAACATTGTTTGGCTGCGATCTCAAAGCTGAATGACGCCCTGGACCAGAGTTAAGTGTAAGGTGGCACCCATTGGGAAATCCTCACGGAGTGGGAGAGTGCTTAGGCTACTCACGTTCACCTGTAAAGAAATGTCAAATACTTTTTATTACTAGTTTATACATCAATCTGGAAATGTTCCATAAAATCATGCAATAAGTATATCAAAAATTAAACGTACCAAACTAAAACACTGACTTCAGAGTTAATAGCACACTGTATAAAGAGCAATAGTTATCCTATAATGTGGACAGAGTTGTTTTCAATATTTAATTCCCCCAAATCAATCATGAAAAGCCCAGATAAAATGCTCGTCTTTAAAATGCCCATGGTCTGGGATGGGTACTGGGTTGAGGTGTGCAGCTTCGATGTATACAATTTTTGTTTGTTAATTTACTTTTGTAAACACATTCTTGAAGAGACAATTATTTTTATGTTTTGTACAATCAGGTTTTTGTCTAGTCTGTCTTgaataatatataaataataataaaaaacatgGTCCAAACTGAGTGTTCTTCAGTCTATTTAACAAAGGCTCTACATGAGCCTGTGAGAATTGCAGAAAAAAAGTTCAACtgtactactgctaatactgtaTTCTAACAGTCATTGTAATTGAGTGACTTGTCATATCTGATTGGCTGATGGCAAGTCACTTCCTGGATGTCTCATGTATACAGTGAGGTCAGTAGGAAAGGTGAGCTGGTATCTGGTATTCCTACAGAGAGTATGGAAATTCCCCTGGGTTGGAGGTCGCCCCCATAGAaataggaattagaatactagaatgtgttaaaggtcagccattttggttaGGGAGTTGGTCAACTATGatttgccagtgctgtgataagatattgtgtaaaataatgGATTTGTAAAATGTATCTGCACTGTatatttgttagctagctatccaaaCAGTTTTACTGCCAATATCCACAGCCATTCACTGGCCGAAATATGTAGATGATAGgacttagacaagttgtaaatgcaacaagtacttatattgtatcatataatagCACTCTCAGATTTCCAAGAAAGCAAAAATGTTGACATTTATGGTCTGGTTACATATATGTTTGTGGCTATTTATACAGAAAAGGTGCATAAAACCCATATAAACTGTTTTTATGTTTATATAACATATTTGGTTGAAAATAATTAtattacacaatttctgatacATCACATGCCTTTGTTTTAATTTCATGCATAAGTAAAATCAGGATTATGCCTTTCATTCCAtttagactggtttggatttctccctgaccaatatgGCAGCCATTTTCACTCCATTCTGGAACTTCGAGGGTTAATGACATAACCgccctctagtaatttaataggatctctatggtcccccccaccctccccagaTACGATATGAAcatgtcattaaaaaaaatgatttacaggaaatttgctgtaaaactgcaacattatctctcagcctcatgccaaaatgtatagaataacaggaaatttgctttaaaaatgCAAAATTCTCtaagcctcatggcaaaatgtgtagaattgcatgagaTACTGCGGTACACCACTGAACTACAGGGTAGAGGGAGATGACACTGAGCACTGGGGAAGCAGGCTATCTAGGCTGTCCTTTATCCATGATCAGCTCTTGGTCACACGGTTGACTGCACCTTTTCACAAACAGACTGGAGCAGGCTGAACGATGGCTGTGCCTCTGTGTCCATGGGGAAATTACAAGGGAAAGTACTGTAACTGGGCGCTGTTTCAATTGTGCTGTATCCCTAATACCTTGCAGTCTGAAATGTAATCCTAAACTACACCTATCTCCCTTCACCTCACACAGTCCACCTTAACATTTCCCATGGCCCACAAAATCCATTGAGGGCTGTCCTTTCAGTCAGTACTGTCCATAGAGTCGAGTGTGCCTTTCTCCAGGGCTGGAGCAGAAGTGTCTACTGTCCAGATCTGAGATCTAAAGTCCCGCTCATCCAATAGGAGTGCACCAAGGCACTGCTGGGTGGAACACCAGGCATGACATGAAAGAAAAAACATTTTACAAATATTTCATCAAAAAAAGTGTGTCAAAAATATTACTCATTTTTCTATAACCCAAATGTGTTTCTTCATAAAGGCTTCCAGGGGCTATAAAGCTCTGCTTGGACTAGAAGGGAATATCAACAAAGGGAATCGGAGAGTGGCATCATCAAATGTTTACACTGAAAGCTGCCCATACATAAGCTACATTCTCCAGAAGTTAGCATACACAAATGCATGAGCTTTTCAGATCACATAGACAAATCATTGCACAAGATGCAAGGTAAAGCTTCAGTAGGTCATCTTCAACCATCCAAATGGAGTATAACTTAAATGGAGTATAACATTTGACATATAGGCTATGCATGTTTGTTCATACATCTAATTCAATACATGTAttgttcatatatatatatatatagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1667104 False 1374 lncRNA 0.37 2 48456820 48460888
TU1667105 True 3011 lncRNA 0.38 2 48456820 48472295

Neighbor

gene id symbol gene type direction distance location
LOC110494013 LOC106565177 coding upstream 32342 48389082 ~ 48424478 (+)
tpgs2 tpgs2 coding upstream 102762 48348965 ~ 48354058 (+)
LOC110494009 LOC106565181 coding upstream 127374 48307825 ~ 48329446 (+)
ubap2a LOC106565184 coding upstream 221629 48194992 ~ 48235191 (+)
dcaf12 LOC106565186 coding upstream 277557 48152982 ~ 48179263 (+)
LOC110494016 LOC106565178 coding downstream 37582 48509877 ~ 48515292 (+)
LOC110494018 LOC106565175 coding downstream 107015 48579310 ~ 48583667 (+)
LOC110494023 LOC106565171 coding downstream 159857 48632152 ~ 48634553 (+)
bap1 LOC106565169 coding downstream 204712 48677007 ~ 48690097 (+)
bsnb LOC106565168 coding downstream 221029 48693321 ~ 48814670 (+)
G1457215 NA non-coding upstream 69064 48387002 ~ 48387756 (+)
G1457214 NA non-coding upstream 72837 48383731 ~ 48383983 (+)
G1457210 NA non-coding upstream 81648 48374951 ~ 48375172 (+)
G1457158 NA non-coding upstream 186774 48269373 ~ 48270046 (+)
G1457311 NA non-coding downstream 102704 48574999 ~ 48575223 (+)
G1457973 NA non-coding downstream 135925 48608220 ~ 48609579 (+)
G1457988 NA non-coding downstream 149139 48621434 ~ 48710016 (+)
G1458072 NA non-coding downstream 277249 48749544 ~ 48749764 (+)
G1458083 NA non-coding downstream 291331 48763626 ~ 48763825 (+)
glrx LOC106565191 other upstream 420237 48030892 ~ 48036585 (+)
G1456969 NA other upstream 617450 47833580 ~ 47839370 (+)
LOC100135862 LOC106565314 other upstream 649339 47805358 ~ 47807518 (+)
G1456570 NA other upstream 1228024 47228219 ~ 47228796 (+)
erc2 LOC106583361 other downstream 450512 48866589 ~ 49040356 (+)
G1458807 NA other downstream 966711 49439006 ~ 49439329 (+)
LOC110494957 qrich1 other downstream 1708870 50181045 ~ 50192699 (+)
atxn7l2a LOC106565127 other downstream 1958512 50427145 ~ 50437612 (+)

Expression


Co-expression Network