G1457973


Basic Information

Item Value
gene id G1457973
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 48608220 ~ 48609579 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1668017
gttgtgattattattttttttaaaacaaagcCATTGTATAACAGATAATAAATTAACAATTAAATGTATCGCCCAAAGCAGCGAAGGAACAGGACTTTCCCAGAGTCTCAAGTCAATGCTTGGACCCATATTTAAAAAGCGGCTCGGCGTAGGCTTGACTATAATCTCAAAGGGTTaacactgatcctagatcagcaccgaCTCAGACGATTCATGATTAGGATTGACCTCCACAGCCAGTCAATTAAACATCACATTAAAATCAGCTCCGATCATGTCACACCTTAttcccagctaacacaccagactccaataatcaactaattatGAACTTCAGTTTAGAATGTTTAAATCAGCAGTGTTTGCTAACGATGGGGGAAAAATGCGACACCCCACTTGCCCCCCCGAGGACTAGACGTAAAATGTCCATTAAAATGTTCCTATACCGGACCtccaggaactttcaataaattccctggttttcgaGAAGTCCTGGTTGGGGGGGATTATGGATTCTGGGAATCTTCCAacagggatttctggaaaaccaggaaATGTATTGAAAGTTGCTGGAATTTTGCAACTCTACTTTGGATGCTCTGAAGACTGAGCAGGTAAAGGAAAATCTCACCCCTTAATACCTGTTCCACTCGCTGCTCTGTACAGATGGCAAATTCCCTCTAGGCCAGGGGTTTAAAGATATCGGACCTCGGCCTATTCTGAAAGACACTACTCTACTTAACAGCCCATGGGTCAATTGGCCTCTTACATTCTCCTTACAAAGTACAGTGGATCATCACACTAATGCGAGACAGGCAGACAAGGAGACACATTGTCACATTTCATAcccactaatacacacacacaggacctgcATTGTATATATTGAATAGGATGAGGGTAACGCGAGCAGAATGatgtcttcatcatcatcatccatcTTCTCTGACATCACTGATGGGACTCCGTGAGTGACCACTCACTACTGTGTGTAGCGTGACTGCACACGGGCCACACCTTACAGAGCCGCATGTCATGCAGTCTCAACACGCGTTGAGCAACAGCACATCTGTCCTCACAGGTCAGGGCGCCCCGGCCAAACATCATCACGGGGAGACCATGGCGGATTAGAGGAGGGTAGGTGGAGGGCTTCAGGGTAAAGTATAGGTGGAGGGAGAAACAAAGGGACCGAGTTGACAGTGGCTAGTCTGAGTCTAGTCTCAGAACATGGAACCAGGCTTCCTCAAACCTCACAGAGAACGACCGGGAAATCCACATGGATGCAGGGGTGATCCAGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1668017 True 1300 lncRNA 0.46 2 48608220 48609579

Neighbor

gene id symbol gene type direction distance location
LOC110494018 LOC106565175 coding upstream 24553 48579310 ~ 48583667 (+)
LOC110494016 LOC106565178 coding upstream 92928 48509877 ~ 48515292 (+)
LOC110494013 LOC106565177 coding upstream 183742 48389082 ~ 48424478 (+)
tpgs2 tpgs2 coding upstream 254162 48348965 ~ 48354058 (+)
LOC110494009 LOC106565181 coding upstream 278774 48307825 ~ 48329446 (+)
LOC110494023 LOC106565171 coding downstream 22573 48632152 ~ 48634553 (+)
bap1 LOC106565169 coding downstream 67428 48677007 ~ 48690097 (+)
bsnb LOC106565168 coding downstream 83745 48693321 ~ 48814670 (+)
erc2 LOC106583361 coding downstream 257010 48866589 ~ 49040356 (+)
LOC118940102 NA coding downstream 368057 48977636 ~ 48980567 (+)
G1457311 NA non-coding upstream 32997 48574999 ~ 48575223 (+)
G1457188 NA non-coding upstream 135925 48456820 ~ 48472295 (+)
G1457215 NA non-coding upstream 220464 48387002 ~ 48387756 (+)
G1457214 NA non-coding upstream 224237 48383731 ~ 48383983 (+)
G1457988 NA non-coding downstream 11855 48621434 ~ 48710016 (+)
G1458072 NA non-coding downstream 139965 48749544 ~ 48749764 (+)
G1458083 NA non-coding downstream 154047 48763626 ~ 48763825 (+)
G1458033 NA non-coding downstream 163478 48773057 ~ 48773274 (+)
G1458093 NA non-coding downstream 165886 48775465 ~ 48775684 (+)
glrx LOC106565191 other upstream 571637 48030892 ~ 48036585 (+)
G1456969 NA other upstream 768850 47833580 ~ 47839370 (+)
LOC100135862 LOC106565314 other upstream 800739 47805358 ~ 47807518 (+)
G1456570 NA other upstream 1379424 47228219 ~ 47228796 (+)
G1458807 NA other downstream 829427 49439006 ~ 49439329 (+)
LOC110494957 qrich1 other downstream 1571586 50181045 ~ 50192699 (+)
atxn7l2a LOC106565127 other downstream 1821228 50427145 ~ 50437612 (+)

Expression


Co-expression Network