G1458725


Basic Information

Item Value
gene id G1458725
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49330735 ~ 49332979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1668872
TTCCACTGCTTAGACGTTGCCAGATCTTAcctatcagctaaccacatcattaTGTTATTGCAATCTGTCAGTCAATGACATGGcatgcaaccattggttgatgcatgcaacgaaCCAAGCAGTGGAATGCGACCACCATCTCCACCCAAAGTCCCTTGAAGAAAACATGGAAAATGACATCAACATGGTATCAATATGCCACTAATCATAATCCACATTATTGACAATACGAACATACATGACATtgtttaaaataaatacaaacaagTTATTTAGTACAAAGATAAACTCAAATTGGATCAAGATTGTGAGTAAGTAGTAAAACATAACAATAGCATCAGCAAACAGACAGCATTTTTATACCGTATTTCCATATTGATACTGCGTTTAAATTgcacttgtaaaaaaaaaagaaagtcataAACATAACTTTTATTGCATCAACAAAGCTGTGAATTAAATGGCACTGCAGAAGTGTTGATGACTTTACCTCTTCTGTTTGCTGAAGTTACAACAACTCTATTAGAGGACATAAAAAGGGCAAATAAAATTGCATTAAAACAGACAAAGAAATTATCCTCCATACTTGTCAATTCTATATTGACATTGCCTGACCTTTGCCACACACACTAGAGTATAAGTAAGTATGTGCATTAGTAATCTCTCAATTAGCCACTGTTGTAAATGCCTCTCGCCACTAACTCGGCAGCCAAAGTTAACAGTTATGGTATCAAAACGTTTAAAATACGGGTTTTCTTTataataatacatcataataacaGCCCCTAAATTTGCAATTCTGCACGTTTGGAGGATCACAGAATCACTTCAAAGAATTCACCACAGTTCCTGTTATTTTCCTCAATCTGTAATGACTGGGGTCAAAACCTCTCACCCAAATTCCTTCTCAAAGACATTGAAAACATTAAAAACTAAATCTAGCTTCTCTTTTGTGGACAGAAAGGCACTACTAGTCAAAACTAAGACCAGAAGATAGAAGAATAAGGTGCCAAAAAGCCTTCTTGAACATTATAAAAATTTGCCAGGCGGTCATTGTAAAgaataatttgtttttaattgactcgcctggataaataaaggttaaataaaacatctaaATACATGTGACAAGATttaaaacaaaagagagaaaggaCTCATTCCAATCAAGATTTCTTACATTAGCCTAGGAGTCCCACTGAATATTGACCCTCGGGAAAACTGTAGCAAGTCACTTTAGTTCCTATGACTTTCCTGCCTCTGATCTTTCTCTACAAATAAATATAAATCAACACAGGTTTGCTCTCCATGGAAATTCTATTACGAATGCTCCAATTATCAACAATTATTAAATGCAACAAAAAGCTTATGAACACCTCACACGTTCACTGAGATAaacaaagataaataaatacattaaaatggCGCAGTCATCCGGGTAGCCGATTAAACTCAACTCCATGATTTACGATGGAGTTGAGCGGCGACTATCACATCAAATGATTTCAGCACCCAAAACATAGCCCGCAATTACACGCGACAGTGGGTTTTTATGTCACTTCGGCGCTCCAGTTCGCCAACACTAGACACCACTCGACTCCATCGTAAATCGTGGAGTTGAGTTGGAGTCGGCTGTAGTCGGGGGAAAGACACAAGagttataatagtatagaggtGGACAATGTGGAGTGAGTGACTGGATCACAAATGAGGATCAAACTGTCGGTCATATCCATAGAAATAGACCTCTATTGGTCATCATACCGAGGAGACTTTCTTGTTTCCTGTAGCCGCACAGAGGGACCAAACCCCTGGGGGTTTCACGTGTGTCTAGGGGCCTggagcatatgtgtgtgtgtgtgtgtgtgtgtcagaggacgTGAGCAGAGTGGAGCTGAAGTGGAGCGTGCTTCATTCGGCTGGAGCGTGGAGCGAATTTCTAAAACGTTGGAGCGCCGACCTTCTATCCTGCTTCATTTGGGCATGCTCTGGCCAGCATTTCCCTCACTATGTTCTTTTAATTATGCCTATtctgttgtatttatttagcctACCCCATCACTAATGCAAAGAGATGTTGATATGAGTACAGTGTCACAAAAGTAGATGGGGTGTTTGTTAAATGATCATTTTTAAACACAAAATGAATGGAGTGAATTTGGAGTGGCAGAAGACTACTCTGTGAGCAATGAGTGGGATCTCTGACCGCTCAactccgctcacatactctggtGTGTGTTTGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1668872 True 2245 lncRNA 0.39 1 49330735 49332979

Neighbor

gene id symbol gene type direction distance location
LOC110494034 LOC106565158 coding upstream 11118 49309152 ~ 49319617 (+)
LOC110494028 LOC106565296 coding upstream 210318 48977901 ~ 49120417 (+)
LOC118940474 NA coding upstream 294811 49033962 ~ 49035924 (+)
LOC118940102 NA coding upstream 350168 48977636 ~ 48980567 (+)
erc2 LOC106583361 coding upstream 392714 48866589 ~ 49040356 (+)
cacna1da LOC106583449 coding downstream 145937 49478916 ~ 49594500 (+)
LOC110494954 LOC106565153 coding downstream 271684 49604663 ~ 49657967 (+)
LOC110494957 qrich1 coding downstream 848066 50181045 ~ 50192699 (+)
LOC110494976 LOC106565138 coding downstream 864124 50197103 ~ 50207320 (+)
LOC110494984 LOC106565139 coding downstream 889662 50222641 ~ 50229675 (+)
G1458301 NA non-coding upstream 61087 49209950 ~ 49269648 (+)
G1458294 LOC106565161 non-coding upstream 109904 49184690 ~ 49220831 (+)
G1458293 NA non-coding upstream 146994 49181902 ~ 49183741 (+)
G1458265 NA non-coding upstream 161868 49146507 ~ 49168867 (+)
G1458264 NA non-coding upstream 188087 49142070 ~ 49142648 (+)
G1458811 NA non-coding downstream 111829 49444808 ~ 49445154 (+)
G1458919 NA non-coding downstream 132865 49465844 ~ 49466045 (+)
G1458927 NA non-coding downstream 136302 49469281 ~ 49469561 (+)
G1458931 NA non-coding downstream 137935 49470914 ~ 49471432 (+)
G1458935 NA non-coding downstream 142566 49475545 ~ 49475959 (+)
bsnb LOC106565168 other upstream 609491 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 906330 48389082 ~ 48424478 (+)
glrx LOC106565191 other upstream 1294152 48030892 ~ 48036585 (+)
G1456969 NA other upstream 1491365 47833580 ~ 47839370 (+)
G1458807 NA other downstream 106027 49439006 ~ 49439329 (+)
atxn7l2a LOC106565127 other downstream 1097828 50427145 ~ 50437612 (+)
G1459769 NA other downstream 1443550 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 1561961 50894903 ~ 50897444 (+)

Expression


Co-expression Network