G1458997


Basic Information

Item Value
gene id G1458997
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 49666498 ~ 49667783 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1669188
CTTGGAGCCTACCTCGATAGGCATGGACCTAGCCTTGCAACCCTGGTTCTGACAGTCGTTGACAAGTCCCTCGTACTTTGCCCTCTTCCTCTCGTACACCTCCTGAAGACAATCTTTCCAAGGGACTGTCAGCTCAACAATAATGAGGGTGTTTGTGGACTCTGACACCAGGGTTATGTCTGGTCTCATGGTTGTCTTGACAATGTGCGACAGGAACTTAACATGGCTCATCACGTAATGTCTTTGACCCTAAAATGTTTGACTTTGATAGGCCattgtgaagtggatttacaaagGATTTAAATGGACAAGTACAATCTGATTTCAAGATTTATCAATAACCCTAAATTCAATGATGTTCCATAGGCCTACACACTGAATTTGGTTTTATTTGGACCTATGGTTCATGAGAATACCTTTTTCAAAGATTTTCCAAAATGTCCAAGATGGAGGAAAATCTATCCAAACAGCCCTTATGAGTCCTTGAGGAAAATGTGTGCACCATGAGGAAAGACACCTACATACAATGTTTCTTGTCACTAGGTGAAACGGGGCAGCAGACATGAAGGTTTAAGTTAGACTGCTTGTAACAGTGCCACCTATAGGCCATTCAGTGCCATTCTTTTTGACCAAGTTACTCTAGTTTCCATGTGAAATATTATAAATAAATTATCAATCTATGCTTGAGTTATTTGACCATGTCAAGGGGGGAAAAATGAAGACTAACAAAAGGTTTCACAGCTTGGCTCTGGATCACAAAAAGGATGAGAAAGCACTGTGACAGCAATGATGAGATCCTGAGCACATTACAGACCCCTCTGTGGATGCCAGAGCAAAAGAAACCAATATCCCTGTGTACTGTACATGCACTGTAGAAAATAACAAGAGTTACGTCAAGGTAGTTATATGAATTaaaagaacaaaaaaaaatccaCCTTTAAAAAAGAGTACTATACAATTGAAAATAAACTGTAAAAAAGATGGTATAGAGATGCGATTGTACGATTTTAGAGACGAGCGGATGGTTGAAGTCAATTTATTCTGCCTGCTTTAAATTTTACAGCAGAGAACAGATAAAAATATGCATGTgaaggataaaaaaaaaacatttaagttACATGAAAGTAATAAAGTTCAGAGCTCTGGCTGTAAACTGAAAATATGAACATTTGcatgttttaaatgtttattGTAACCTATAACTCTTAATGCTTACCCCGATCCCAAACCCCCTCGTTTGAGGACGCTGCTACTATCTAAATAAACACAAATCAATATTTTCTATC

Function

NR:

description
PREDICTED: uncharacterized protein LOC105892664, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1669188 True 1286 lncRNA 0.38 1 49666498 49667783

Neighbor

gene id symbol gene type direction distance location
LOC110494954 LOC106565153 coding upstream 8531 49604663 ~ 49657967 (+)
cacna1da LOC106583449 coding upstream 71998 49478916 ~ 49594500 (+)
LOC110494034 LOC106565158 coding upstream 346881 49309152 ~ 49319617 (+)
LOC110494028 LOC106565296 coding upstream 546081 48977901 ~ 49120417 (+)
LOC110494957 qrich1 coding downstream 513262 50181045 ~ 50192699 (+)
LOC110494976 LOC106565138 coding downstream 529320 50197103 ~ 50207320 (+)
LOC110494984 LOC106565139 coding downstream 554858 50222641 ~ 50229675 (+)
rhoa rhoa coding downstream 565864 50233647 ~ 50239667 (+)
zgc:112334 LOC106565137 coding downstream 585024 50252807 ~ 50259008 (+)
G1458998 NA non-coding upstream 1567 49664506 ~ 49664931 (+)
G1458992 NA non-coding upstream 77616 49587952 ~ 49588882 (+)
G1458935 NA non-coding upstream 190539 49475545 ~ 49475959 (+)
G1458931 NA non-coding upstream 195066 49470914 ~ 49471432 (+)
G1459027 NA non-coding downstream 1428 49669211 ~ 49669740 (+)
G1459030 NA non-coding downstream 4338 49672121 ~ 49672345 (+)
G1459052 NA non-coding downstream 40127 49707910 ~ 49773572 (+)
G1459076 NA non-coding downstream 88725 49756508 ~ 49763510 (+)
G1459092 NA non-coding downstream 115802 49783585 ~ 49815087 (+)
G1458807 NA other upstream 227169 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 626142 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 945254 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 1242093 48389082 ~ 48424478 (+)
glrx LOC106565191 other upstream 1629915 48030892 ~ 48036585 (+)
atxn7l2a LOC106565127 other downstream 763024 50427145 ~ 50437612 (+)
G1459769 NA other downstream 1108746 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 1227157 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 1412349 51080132 ~ 51137770 (+)

Expression


Co-expression Network