G1459917 (nckipsd)


Basic Information

Item Value
gene id G1459917
gene name nckipsd
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50278420 ~ 50280700 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1670263
AGATGTTTATTAGTTGATTGTAAACattaagaaaatacactttgtaGCGTCACCCCTCTCTGAACAACCATTTCAGATATATTTAATTGGGAAAATATAGTTCAGTTGGTTTTATTGCTATAACACAGTCGTACCTTAAGGGACAATGGAGGCTCAAACCTACAGGGACGATGATAAAACCATACATAGTTACGAAAATATACACAAACCGTACATAGACACGCACATGCATAGCTTTATGCATTAACACCGGATAATAAAAACACATACGTCAGAGAAAACACACTCTGGTATATATGTTTATATGTGTAAACACTTCCTTTTAAGTGTGTGTTAAAAGGTATACGTGCATCATGACGGCCACGACTATTTTGCCACATAAACACTTCCCCTATTAGCTCTAACAGAGCCAAGTAAAAATAAACTgacacaaagagagaaagagctctGATGGAGAGACACCGTACTGTGGTAACTGATAGATTTCAGACCAAAATGACCAGGgcaaagcaatcaatcaatcttgGTGACAAGTCCCTTAGTTAACCCCagactacatttaaaaaaaacaacaacaaaaaaactgacCAATCGAATCTTATCAATTCCTTATTATTTCCTATGAATAAATAACTACATTCCATTTCAGAGAGCCATAGCTATATAGGAAGTTAGTCAAGGCTTAGTATGTAGAAGCAGCGTGTTACAGCTTGTTATTACAGTACCATTACGTTCCATCTACAGCACaagcagcagagcagagtaggAGTGGTCTGGTTGAGACAAATTTAGAGCATGTCATATTTTAGCCATACCTAGAGTGGAGGTTATTGTAGATAAAGTGTAGGGAAGAAAGCAAGGTCACAAGTAATGGCGAAAGCAAGGTAACAAGTAATGGTGAAATCAAGGTAACAAGTAATGGTGAAATCAAGGTAACAAGTAATGGTGAAAGCAAGGTAAAAAGTAATGGCGAAAGCAAGGTCACAAGTAATGGCGAAAGCAAGGTAACAAGTTGTGCTCAGTCAGAGAATCACAGCCATAGATTTTAAGGTAAATGAGGCTCATGTAGCAGCATTGCCATTGCAATAAATAGTGAGTACTAAACTAACCTCAAAGCCTAGAATGTATTATTGTCAGAGGTCTGGTTTccaggacacagattaagcctagttaATGTAGATTCTCCATTGAGCACGCTTTTCAATGCAGAActtggcttaatctgtgtctagcaAACTGGACCAGAATGTTTTGTTATCAGTATAATCACCTAATTTGTCTTTTCTTTGAACTGTCTTCGTAACATACTGTGAGGCCATGCCAGGTGGTGAGGAATAAGAGTGAGTGATCAAGACACATGAATAGACTGAAAGTAAGAAGACATATACAGCACACCAGTCCCAGGGTTACAAGACCCTCCGTTCACACCAGTCCCAGGGTTACAAGACCCTCCGTTCACACCAGTCCCAGGGTTACAAGACCCTCCGTTCACACCGCAGTTTGGTCCCTCAGTACAAGGGAGCACATTTAAAGCACAATGCAGTATGCTGTTGGGTAACTCTTCACTTGAATCCTCAGACATAAGAGCTACATAGCATTATCACAATCATGACACGAAGGACGCAATAAACCGCCGTGACAGCTGGTGCTCATGCCATCTCTTATGTCATAATGGTAAAAAGTGTGACGGAGGGTTGTAACACTCAGGAACTAAGTAGCTGACTACAGTCCTTCGTCAACCCTAGGAAGCGCCACAGTACCATCTTTCGGGAATAAAGGAGACAGACTACCGGCTCATGAGTGCACAGCACCGCTGTCATATTCAGTCGTCCTAGGTGTCTCTGATCTGAGGGAATTCCTTGTAGATCTCCTGCACTATTAGCTTATCCATCTGTTTGGCTGTGGCCCCGCCCTCGTCCGCTCCCGAGTCGTCCTCTCTTAGAATCCTTTGCAGCGCGCCCTGCAGGTCGGAGAGGCGGTGCCGGTGCTCCAGGTAGTCTGTGGAGCGCATGACGGAGTGCATGAGCGCGAGGTACTCCATTCTCAactgggaggaggagggaaaaaaagaaagaaagttcggaaggcgaaagagagagagagagcgagaggtcaTTAACACAGTCACTATACAGCAGACATTCGCTTTCCTGTTCGGGATGATGTCATGGCGAGGGTTCCTgctggtgtaacagtataactttagtccgtcccctcgcccatacccgggctcgaaccagggaccctctgcacacat

Function

symbol description
nckipsd Predicted to enable Arp2/3 complex binding activity and myosin binding activity. Predicted to be involved in endocytosis. Orthologous to human NCKIPSD (NCK interacting protein with SH3 domain).

NR:

description
PREDICTED: NCK-interacting protein with SH3 domain isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1670263 True 2257 lncRNA 0.43 2 50278420 50280700

Neighbor

gene id symbol gene type direction distance location
ndufaf3 ndufaf3 coding downstream 15151 50260850 ~ 50263269 (-)
LOC110494973 tmem43 coding downstream 31352 50239966 ~ 50247068 (-)
LOC110494990 NA coding downstream 82064 50190302 ~ 50196356 (-)
LOC118940151 NA coding downstream 100367 50173658 ~ 50178053 (-)
LOC118940040 LOC106565143 coding downstream 105161 50166796 ~ 50173259 (-)
LOC110494951 LOC106565133 coding upstream 20223 50300923 ~ 50332397 (-)
fblim1 fbli1 coding upstream 55911 50336611 ~ 50346335 (-)
slc25a34 LOC106565132 coding upstream 71849 50349819 ~ 50363084 (-)
fbxo42 LOC106565130 coding upstream 83707 50364407 ~ 50380405 (-)
zbtb40 zbtb40 coding upstream 165105 50445805 ~ 50455730 (-)
G1459890 NA non-coding downstream 27576 50250633 ~ 50250844 (-)
G1459873 NA non-coding downstream 45206 50232878 ~ 50233214 (-)
G1459869 NA non-coding downstream 56904 50221224 ~ 50221516 (-)
G1459922 slc25a20 non-coding upstream 5256 50285956 ~ 50289536 (-)
G1459941 NA non-coding upstream 101027 50381727 ~ 50382043 (-)
G1459943 NA non-coding upstream 110665 50391365 ~ 50391787 (-)
G1459944 NA non-coding upstream 111900 50392600 ~ 50392826 (-)
G1459325 LOC106565145 other downstream 242908 49991563 ~ 50035512 (-)
LOC110494969 LOC106584726 other downstream 320157 49953456 ~ 49964331 (-)
G1459333 LOC106584726 other downstream 512351 49727352 ~ 49766069 (-)
G1459296 NA other downstream 616499 49661551 ~ 49661921 (-)
G1460128 NA other upstream 474234 50754934 ~ 50760996 (-)
LOC110494046 LOC106565111 other upstream 586527 50862652 ~ 50875481 (-)
G1460539 NA other upstream 718054 50998754 ~ 50999404 (-)
LOC110494054 LOC106565105 other upstream 782544 51063244 ~ 51077345 (-)

Expression

G1459917(nckipsd) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

G1459917(nckipsd) Expression in each Bioproject

Bar chart with 20 bars.
G1459917(nckipsd) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network