G1459922 (slc25a20)


Basic Information

Item Value
gene id G1459922
gene name slc25a20
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50285956 ~ 50289536 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1670273
atttatttatttatttacatacaTAATGACACATACAAACATGAGACAATGGCCCAATGATGGTTCTCCATGTTGTGGCATAAGTTACATCTGCAACAACCTTGGAGAAAAGTATTATTCATTAATTCATTAATAAATCTACTATCAATTTCCAACTCAGTGATTTGGTTACTGGATCACAGTTTGGAATGAGACTATTCAGGGATGTTTTAATGTACTGGTATGTTTTAAAAGCCATATGTTTTGTGTTtaaacacacacgcagagacacacaacagagagacacacgcacacacacggcaTACTAACACACATTATACGCACCCTGTGAAAATGTACCTATTCCCTGATATGCAGACTCACTGAGTAAGTAAAGGCACATGTTCAATTCACAAATGTTCTaattaaaaacacacaaaaaactaaaCAAATGCAAGTAAAACACCAAGGAGTGAGAACAATGTGTGCGTTCCCCCCCTCTGTCCACCTCTACAATGTGTGCGTCTTTCTCAGTCCGTATGCCAGTCAGACGTTCAATGTGTACCTCTGCGTAAGTGTATGTATGTGAGTACTGTCGGTCTCCACTGTGTTAGTGAGTTCTGTCTCTGACGTCTACGCCTGGGGCTTGGACAGGGATCACAGACCGGGTGCTGCATTGGCAGGGAAAGCTCTGAGCATGACAGCGGTGAAGCCTTTGTACAGAGAGGCCACGCCCTCCTCCCTCAGTAGCTCTCGTAGAACATCCCGGAAACCATTAGGGTACTTCCCTTCAggggCTGTCTGGAAGCGAGACTTGAGTACATCAGGGGGAATGGCCACGGCCCAGTTAAAGATTCCTGCCATCCCTCCAGCGAATAGAACACTAGGAACACTCAGCTCATTGGGGCTCTTGCCCTCTGGTGTGAGGAGGCGCTTCAACCACTCATAGGTCATGAAATACATCCCACTGGCTGGCACGTCTCTCATGAGGGTGAGAGCAGTGCCTCTGTAGATTCCCCTGATCCCACTCTCTTTGTACAGCTGCTTCACACAGTCCATGGGCCCAGCATACTTCACCTCCCCTTTGGCCGCCTGGATCTGTAGGAGACACTTGATACGTTCTCCAGGGGCCATGATGGCTGTGGTGAACACGCCTGACAGCATGCCGGCAGCAAACAGCTGTGGATACGTAAGGACATCGTCAGGGGTTTTCTGTTGTAGTTTCTTGCCCAGGCCAAAGCCGAAGAAGCAGACAGCGAACATGGGTGTGACTCCAATGATAGGGGCTGCCATGCCTTTGTACAGGCCTTTGAACCCC
>TU1670272
atttatttatttatttacatacaTAATGACACATACAAACATGAGACAATGGCCCAATGATGGTTCTCCATGTTGTGGCATAAGTTACATCTGCAACAACCTTGGAGAAAAGTATTATTCATTAATTCATTAATAAATCTACTATCAATTTCCAACTCAGTGATTTGGTTACTGGATCACAGTTTGGAATGAGACTATTCAGGGATGTTTTAATGTACTGGTATGTTTTAAAAGCCATATGTTTTGTGTTtaaacacacacgcagagacacacaacagagagacacacgcacacacacggcaTACTAACACACATTATACGCACCCTGTGAAAATGTACCTATTCCCTGATATGCAGACTCACTGAGTAAGTAAAGGCACATGTTCAATTCACAAATGTTCTaattaaaaacacacaaaaaactaaaCAAATGCAAGTAAAACACCAAGGAGTGAGAACAATGTGTGCGTTCCCCCCCTCTGTCCACCTCTACAATGTGTGCGTCTTTCTCAGTCCGTATGCCAGTCAGACGTTCAATGTGTACCTCTGCGTAAGTGTATGTATGTGAGTACTGTCGGTCTCCACTGTGTTAGTGAGTTCTGTCTCTGACGTCTACGCCTGGGGCTTGGACAGGGATCACAGACCGGGTGCTGCATTGGCAGGGAAAGCTCTGAGCATGACAGCGGTGAAGCCTTTGTACAGAGAGGCCACGCCCTCCTCCCTCAGTAGCTCTCGTAGAACATCCCGGAAACCATTAGGGTACTTCCCTTCAggggctgggaggagagagagagagggctccaGTCATACTATGGTGTTTTACACAGTACACTTAAGGCTTCCCAACCCAAAACAGTTCTGAAGAGTGTGTACATATACAGAATTATGACATTTTGTGAAGTTTTTGTTCACTTTGAACTTCGgtgagtttttttgtttgttcggCTGTCCGGTCACACAATTTGTTTTCTGGAGGCAAGTCGAAGTTCAGAGCCCAAAATCCACACCAGATTTCTTGACTTATCTTAGATTCAttcggactattttgaggaagtgtataccgTCTACGGCgtttcaaaatggacaaacagtaataTTGCCGCTTTTTTCCCtcgtttttcaagcgaaggtcttttaagggagtatgcgagcgcACTCGTTC

Function

symbol description
slc25a20 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in visceral fat. Human ortholog(s) of this gene implicated in carnitine-acylcarnitine translocase deficiency. Orthologous to human SLC25A20 (solute carrier family 25 member 20).

NR:

description
PREDICTED: mitochondrial carnitine/acylcarnitine carrier protein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1670273 False 1297 lncRNA 0.47 7 50285956 50289536
TU1670272 True 1162 lncRNA 0.43 2 50288042 50289536
Loading

Neighbor

gene id symbol gene type direction distance location
ndufaf3 ndufaf3 coding downstream 22687 50260850 ~ 50263269 (-)
LOC110494973 tmem43 coding downstream 38888 50239966 ~ 50247068 (-)
LOC110494990 NA coding downstream 89600 50190302 ~ 50196356 (-)
LOC118940151 NA coding downstream 107903 50173658 ~ 50178053 (-)
LOC118940040 LOC106565143 coding downstream 112697 50166796 ~ 50173259 (-)
LOC110494951 LOC106565133 coding upstream 11387 50300923 ~ 50332397 (-)
fblim1 fbli1 coding upstream 47075 50336611 ~ 50346335 (-)
slc25a34 LOC106565132 coding upstream 63013 50349819 ~ 50363084 (-)
fbxo42 LOC106565130 coding upstream 74871 50364407 ~ 50380405 (-)
zbtb40 zbtb40 coding upstream 156269 50445805 ~ 50455730 (-)
G1459917 nckipsd non-coding downstream 5256 50278420 ~ 50280700 (-)
G1459890 NA non-coding downstream 35112 50250633 ~ 50250844 (-)
G1459873 NA non-coding downstream 52742 50232878 ~ 50233214 (-)
G1459869 NA non-coding downstream 64440 50221224 ~ 50221516 (-)
G1459941 NA non-coding upstream 92191 50381727 ~ 50382043 (-)
G1459943 NA non-coding upstream 101829 50391365 ~ 50391787 (-)
G1459944 NA non-coding upstream 103064 50392600 ~ 50392826 (-)
G1459952 NA non-coding upstream 114007 50403543 ~ 50404039 (-)
G1459325 LOC106565145 other downstream 250444 49991563 ~ 50035512 (-)
LOC110494969 LOC106584726 other downstream 327693 49953456 ~ 49964331 (-)
G1459333 LOC106584726 other downstream 519887 49727352 ~ 49766069 (-)
G1459296 NA other downstream 624035 49661551 ~ 49661921 (-)
G1460128 NA other upstream 465398 50754934 ~ 50760996 (-)
LOC110494046 LOC106565111 other upstream 577691 50862652 ~ 50875481 (-)
G1460539 NA other upstream 709218 50998754 ~ 50999404 (-)
LOC110494054 LOC106565105 other upstream 773708 51063244 ~ 51077345 (-)

Expression

G1459922(slc25a20) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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G1459922(slc25a20) Expression in each Bioproject

Bar chart with 17 bars.
G1459922(slc25a20) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network