G1459518


Basic Information

Item Value
gene id G1459518
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50297463 ~ 50358790 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1669769
ttggaggtgtacctgtggacgtatttcaaggcctaccttcaaactcattaactctttgcttgacatcatgggtaaatcaaaagaaatcagccaagacctcagaaaacacaTTGTacacctccataagtctggttcatccttgggagcaatttccaaacgcctgaaggtaccacgttcatctgtacaaacaatagtatgcaagtataaacaccatgggaccacgcagccgtcataccgctcaggaaggagacgcgttttgtttcctagagatgaacgcactttggtacgaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaagtatctatatccacagtaaaacgagtccaaattgacataatctgaaaggccgctcagcaaggaagaagccactgctcaaaaaccgccataaaaaagccagactacggtttgcaactgcacatggagaaatgtcctctggtttgatgaaacaaaaataggccataaattggccataatgaccatcgttatgtttagaggaaaatggggaggcttgcaagctgaaggacaccatcccaaccgtgaagcacgggggtggcagcatcatcttgtgggggtgctttactgcaggagggactagtgcacttcacaaaatagatggcatcatgaggtaggaaaattatgtggatatattgaagcaatatctcaagacatcagtcaggaagttaaagcttggtcgcaaatgggtcttccaaatggacaatgaccccaagcatacttccacagttgtggcaaaatggcttaaggacaacaaagtcaaggtattggagtggccatcacaaagccctgacctcacacctatagaacatttgtgggcagaactgaaatgcttgtgcgagcaaggaggcctacaaacctgactcagttacaccagctctgtcaggaggaataggacAAAAtttacccaatttattgtgggaagcttgtggaaggctacccgaaacatttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaccttctgacccactgggaatgtgatgaaagaaatgaaagctgaaataaataattctctctactattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaagacagggaatttttactaggataaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttctgacttcaactgtaccttagGTCTACACATTGACTTTGAACTTTATTGTAAGGGTGTGAACAGTTTGCCTGATGACCAAAACTGAATTATTCTGCTGGTCTTTGTTCACTTCATATTgtacttcagtctgagactgccatcgtTGAAGTCGTTTTTAGCGACATCAAAACAAAGTCAGCTTGGATCATCTCAAACCAAGTATCAAAGAGAATGAAGAATTTTTAAGAAGACACTTTATCCACAAgggttctggctctggcccaacccatcggtttctgggacaAATCAATACGGTTAGAATGCATTTGCGTTCTAGAAATCATCAGGGAGGtgctcagatccagactcatagCGGCGAAGAAACTAACGTCCATGGGCGTGGCGTAGCGTTTGGCCGGAAGCAAGGTGTTTGGCCGGAAGCAAGGTGTTTGGCCGGAAGCAAGGTGTTTGGCCGGAAGCAAGGtgtttgggtagccaggcaaatGAACAGTGCCATGAAAAAAGTGAACAGTGCCATGACAAATTGAAAAAATGTATCTCTTAGATCAAAAGGGCCACACTACATCCCTTAACAGGGTTTTAAAAATAAATCCCTGTGCTTGTCTTTATCTTGATGATTACAGTATCAGTCACAAaggttgtgtgtttttgtttcgtTGACACCACTCCACGCCTCTGTTTGCATGTTACTGACTGGCTGGTGGTTGTGAAACGTGTCACTAGGGTTCACACGGATATGGTTAGTTATGCTGGGGGTTGGCTGAGgaagtaggggggagagagagagggatgtgagccAAAATGATAGAGGAGTGGGATTGGAAACAAAGTGACATACTTACACAACATGAAGGACTGGTGTAGAGCCCGAACAACTAGAGAACACTGGGTCCAACTGTTTCACGCACAGCGCACACACTCCTCACCTGATGGTTGTGCTGGTGACCCACTGCGATGGCCTCGACTGTCTGGGCCTGCAGATGTGTCTTCACCTGTGGAGGAAACATAAGACACTTGCTTCAATGTATTTTATACCAGAGGCGGCtgat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1669769 True 2332 lncRNA 0.44 3 50297463 50358790

Neighbor

gene id symbol gene type direction distance location
slc25a20 slc25a20 coding upstream 7914 50283097 ~ 50289549 (+)
LOC110494960 nckipsd coding upstream 16754 50263347 ~ 50280709 (+)
zgc:112334 LOC106565137 coding upstream 38455 50252807 ~ 50259008 (+)
rhoa rhoa coding upstream 57796 50233647 ~ 50239667 (+)
LOC110494984 LOC106565139 coding upstream 67788 50222641 ~ 50229675 (+)
LOC110494986 LOC106565131 coding downstream 23282 50382072 ~ 50386942 (+)
LOC110494971 LOC106565129 coding downstream 41557 50400347 ~ 50402864 (+)
sypl2a LOC106565128 coding downstream 49886 50408676 ~ 50422865 (+)
atxn7l2a LOC106565127 coding downstream 68355 50427145 ~ 50437612 (+)
LOC110494981 LOC106565126 coding downstream 79880 50438670 ~ 50445648 (+)
G1459494 NA non-coding upstream 83052 50214036 ~ 50214411 (+)
G1459493 NA non-coding upstream 83510 50213753 ~ 50213953 (+)
G1459492 NA non-coding upstream 84001 50213231 ~ 50213462 (+)
G1459490 NA non-coding upstream 86473 50210735 ~ 50210990 (+)
G1459480 NA non-coding upstream 120508 50176692 ~ 50176955 (+)
G1459562 NA non-coding downstream 10259 50369049 ~ 50369289 (+)
G1459568 NA non-coding downstream 21984 50380774 ~ 50381005 (+)
G1459570 NA non-coding downstream 32477 50391267 ~ 50391700 (+)
G1459575 NA non-coding downstream 45586 50404376 ~ 50404630 (+)
G1459582 NA non-coding downstream 65025 50423815 ~ 50424018 (+)
LOC110494957 qrich1 other upstream 113767 50181045 ~ 50192699 (+)
G1458807 NA other upstream 858134 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1257107 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1576219 48693321 ~ 48814670 (+)
LOC110494013 LOC106565177 other upstream 1873058 48389082 ~ 48424478 (+)
G1459769 NA other downstream 417739 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 536150 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 721342 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3815224 54147039 ~ 54189617 (+)

Expression


Co-expression Network