G1459595


Basic Information

Item Value
gene id G1459595
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50585636 ~ 50632370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1669864
AACCATTTGTAGGAAGTTCTATACATAAGGTAGAAATTGTATTATTTCCATCAGTTAACACCAGGTGTTTACACAGAAGTTAAATGGGAGGAAATGCACACTATGCAGTTGTAGACGGTAGAATATTTCAGACCTTTGCTAGCTGTGTTCATACATTTGTATGGGGAAATAAATTAGTCAGTCAACCATTGAGATTCTTATATTTTTTGTTCTTTAGCTTTTTGCTCTTGGAAAATATATTGTGCAGCAGTAATACTTTACTGACATTTCATTGTAACGTGTTCTATTCAGTAACAAACACAATAAGGAAAAGGGTTTTTATTGACAACTTCTTTAGTTAAGTAATAGTGCTGCTAGTTAAGGGAATTCAGAGGGGGCGGCGTAGTCATTTGTCTGCAAGCAGTCAGAGAAAAGAGCATGGACAGCAACTTAGAACAGTTCACCAAACCATATTTCTAGAaatttactgacacaaaaagtgTCAATAAAAGTTGAATAATAACCACAGGTGGTCTGTGACAATGACATATCCAGGGGCATCAGATAAAAAGCAGAAAATAAAAATATTCCTACTGAGAGAAAGGAAGACGGTTAGAGGAAGAAAAAAAGGTGCTCAGGGGGAGAAACTACACCCCAGGGTACACTGACTCCAAGTGGATACAGCATACTGTAACCAGAACAAGTGGTTGAACACATCActttattatcatcatcattgttTCAACTTGGCAACAGAACATTGCCAATGCAACCTTGTGAGAACATTTCTGCTGTAGGTAGTCAGCATCAGATCAGTGAGTTGTGCGTGAACAACTTCCTGTGAGCTAAAATAGACATATCTTTTGAATAAGCGCTTCAACTGTAACAATTTGGCAACCCATCTCCTGTATGGGCAAGGAGTCACATACAGtaagtaccattcaaaagtttggacacagctactcattcaagggttttttactttatttttcctatttttgacattgtagaataatagtgaagacatcaaaactatgaaataacacatactgaatcatgtagtaaccaaaaaaaaagtgttaaaaaaatcaaaatctatttgagattctaagtagccaccctttgccttgatgacagcgttgcacactcttggcattctcaaccagcttcttgagttcccacatatgctgaagaCTATGcatgctgcttttccttcactctgcggtccaactcatcccaaaccatctcaattggtttgaggtcggggaattgtggaggtcaggtcatctgatgcagcactccatcactctccttggtcaaatatcccttacacagcctggaggtgtgttttgggtcactgtcctgttgaaacacaaatgatagtcccactaagggcaACCCTGATGGgttgtgtatcgctgcagaatgctgtggtagctatgctggttaagtgtgccttgaattctaaattaatcatagacagtgtcaccagtaaagcccccctcctcctccatgcttcacggtgggaaccacacatgcggagataatccgttcacctactctgcgtctcaaagacacagtggttggaaacaaaaatctcaaatttggactcatctgaCCAAAGGACAGAGTTACAGCGGTCTAATGTcccttgctcgtgtttcttggcccaagcaagtctcttcctcttatgggtgtcctttagtagtggtttctttgcagtaattcgaccatgaagacctgattcacacagtctcctctgaacagttaatgttgagatgtgtctgttacttgggctgcaatctgaggtgcagttaactctaattaacttatcctctgcagcagaggtaactctggttcttcctttcctgtggtagttcccatgagagccagtttcatcatagcgcttgatggtttttgcgactgcacttgaagaaactttaaaagttcttgaaataaaacatttgaaatgtaatgtctaaaagtaatggactgtcatttctctttgcttatttgatctgttcttgccagaatatggacttggtcttttaccaaataggggtatcttctgtataccacccctaccctgtcacaacacaactgattggctctaaTGCattaaagaaattccacaaattaaattgaattgcattccaggtgactacctcatgaagctggttgagagaatgccaagagtgctaAATCTGTCAAGGCAAagcatggctactttgaagaatctcaaatatattttggttactacatgattccatatgtgttatttcatagtttgtcttcattattattctacaatgtagaaaaaagtaaaaagaAACTCTGGAAttagtagatgtgtccaaactttcgacgGGTACTGTAATAATAGAATTACTGCAAAAATTAAATTGTATCTCACAATATAGAACATAATAAAAATAGATTTACATATCATTGAAATAATTTCTATGTAGGACATGCAGTATTTCATCAGTTACCATGATTGGTTGACCTAAAGAATGGAGGATAAACCCATTTCCTCTCATGGCAAAATAGATTGGTCCCCCTGCAACTAAGAATTCCAACAGCTTCAGTATTATGATGGGTTTGTCCAGAGCAATAGAACAAGTCAATATGTTTCTAGCAGTGATGTCTTAACTTGGCATGCATTTCAACTCCCTTCAGTTGATCACTGAAAAAAGGAAGGGATAGGTCAAGTCTATGGTGGAATTCCCACAGAAGTCTTCTCTGTATTGCTTTCATGTGATCAGGCCTTTCAGACCAGTGACTGAAGTGAAAGATGGAAAGGAGGGGGGGAGCAACTAAAGGAGGAGGATCCATTTCTCTTAAAGTATTACAAAATGGTCTTTAGTTAGACTGTGCGACTGACCGACAGCTGGCCAATTTTTTCACACCCTACTCAGTGGATGAATGAGAAGAGGGGGGAAAGAACGAGTGGGAAGCTCATCATATGACAATTTTACTGTTAAGGCATCCGCCGCATACATAGGTTTCGGTTTGCTCCCAGTAGAACTCGGCTAGGCAAAGCGAATGTTTGTGCTTGCGTACTCCCTTAAAACCTTCTCTTGAAAAACAAGGAAAAAAGTGGCAATATTACTGTTATTTATCCCTCTTGAGCCAACACTTCCTccaaaaaaaatgacgttttcacCAAGGAGGTCTTAGATGTTTGATGCAGTAAATCAAGTGAAAtaatgtgcatgaaaactagtGGTGCAGTGCAGACAGTAGGGTCTGGCTGCTGCTGCGCTTTCTTATTGAATGACAGCATACACTTCTTTGAACAATCCGGTTCATAGGTCAACAGTAGGGGTGGGAACTATCACCAACTAAGGGACGTAGGCGTCGGCTACTGAACTTACGCTTgcctcaagaaaaaaaaaaaaaagagtgcgTGAACAGCCGGAAAGAACCCTGccgaacaacaaaacaaaaacgtcACATGATGTTGTCGTAATTTATGCGTGAACTGTTTTGACTGGGAAGCACAAGACCGACTTCAGAGTTTGGCTTATCGACAGTGCTCAGGTTACAGAACACCGCCTGGCtgaaaaaatacatacaaataatACTTCAATTATACATAAGTAATCTAGCGTAAACATAAGTAAAATCATACATGGAAACATCTTACACAGACCCCGGGGTCAGGTTAACCTTCACAGTATGACAACACAGAATTGTCCCATGGTTTTAGACCCAACAGTTgtacacaaaataaaacaaaaggtATTGAGGTTAGGAGGTTGTAAGAATCTAtaaatgtatatatATATGTGTGTGCAGCAGAGGTGGTTAAGCGGACTATGATTGCTTGATGAGTAGCTGTCGAGTAGCTGTAGTTGTCTGGACAGTGGTTCCCTGATATACTATACATTTAGCAGAAGATCTGGGTTCGATACTGATTTTGTTGCACTCACTGCAATGTCCTGGTCCATTCTGTGCCGGCTGGCCCGAACTTTCTCCAGCTGGTGTTGGGCCTCCTCCAAAGCCTGGGACTTGGTTACCATCTCTTGCCTGAgctcctgcttctctctctgggtCTTCAGGATGTACTGCTCCTGTTCCTCCTGGAGGGCCAGCAGGGccttcatcttctcctcctcctctaccagcAGCCttgggatgaagagagagaaggagagccaCCACCACGCAGGGTTCTAAGTCACAGTAGCACACTGACCCTTGTTGGAGCTCTAAAAATAATGGGCTGGACCTATGGCAATAATGTTACAGTTACAGAATAGGAATGCCCTAACTTATTGTGCATTCTAAAGCTTCTTTTTGTGACAGTTGTGACAATGTCATAATGAAGGGACAAATCAAAGAGCAGAGTTATGACAATGTCATAATGGAAGGACCAATCAGAGAGCAGGGTTATGGAAAAAGTAAACATGAAAAGACATTACGCCCTAAGATGTTCCGTTCCTGAGTAAGTAGACAAACCACAAGTACCGCACAGAGATGACAGGAAATCGTTGGCGTCTCTCTGAGAGTAAACACGTCTACAAACAAAAACTGTTGTGATCTGTGGAGGACAACAGCatcatatgtatgtgtgtgcactcGCTTGACTGAGGGTACCATGCATTTGGCTAAACAGAAGTACAGCCAAATCACTTCAGGTTAATATAAGCTTTAATATATTGCAGATATGTCACGTTCACTGGAATAAatatcggaccaaggcgcagcagatgttgagttcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1669864 True 4706 lncRNA 0.41 2 50585636 50632370

Neighbor

gene id symbol gene type direction distance location
LOC110494989 LOC106565121 coding upstream 42470 50510419 ~ 50543166 (+)
ldlrad2 LOC106565124 coding upstream 85550 50483057 ~ 50500086 (+)
LOC110494981 LOC106565126 coding upstream 139988 50438670 ~ 50445648 (+)
atxn7l2a LOC106565127 coding upstream 148024 50427145 ~ 50437612 (+)
sypl2a LOC106565128 coding upstream 162771 50408676 ~ 50422865 (+)
LOC110494982 LOC106565312 coding downstream 25671 50658041 ~ 50664680 (+)
LOC110494953 LOC106565294 coding downstream 32808 50665178 ~ 50697862 (+)
kctd20 LOC106565116 coding downstream 69792 50702162 ~ 50708829 (+)
LOC110494040 cept1 coding downstream 96671 50729041 ~ 50748688 (+)
trnaa-ugc-133 NA coding downstream 108238 50740608 ~ 50740681 (+)
G1459681 NA non-coding upstream 3145 50582195 ~ 50582491 (+)
G1459666 rl10a non-coding upstream 6967 50578017 ~ 50578669 (+)
G1459679 NA non-coding upstream 9492 50575856 ~ 50576144 (+)
G1459673 NA non-coding upstream 11777 50569250 ~ 50573859 (+)
G1459656 NA non-coding upstream 40816 50543854 ~ 50544820 (+)
G1459693 LOC106565117 non-coding downstream 12529 50644899 ~ 50650247 (+)
G1459724 NA non-coding downstream 76565 50708935 ~ 50711323 (+)
G1459756 NA non-coding downstream 128662 50761032 ~ 50761269 (+)
G1459764 NA non-coding downstream 138675 50771045 ~ 50771281 (+)
G1459771 NA non-coding downstream 145389 50777759 ~ 50778334 (+)
LOC110494957 qrich1 other upstream 401940 50181045 ~ 50192699 (+)
G1458807 NA other upstream 1146307 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1545280 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1864392 48693321 ~ 48814670 (+)
G1459769 NA other downstream 144159 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 262570 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 447762 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3541644 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3624011 54256327 ~ 54264616 (+)

Expression


Co-expression Network