G1459724


Basic Information

Item Value
gene id G1459724
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50708935 ~ 50711323 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1670005
AATTGTACAAATGTTTTATTGAAAGATGAAATAATTCTCAGCATTTAAAGCTTTTTTTTTCTCATAGTGAACATGTGTTCTCCTTTGCTGAGAAATATAGTTGAGCTGAAAACATTCAAACCTCATACAGAAGGATTCAATAagatacacacacatggacacacacacacacacacacacacagatctataCATAGTATATGTGTCACCCAGCAGAGAAAAGACTGCGGTTTATACATGTACTCATTTGCATATCAATATTTTTCCTTGTTCAAAAGGAACAGCTTGGTGTGAGCATTGATACAAAATATAGGCTATATTAAAAAACATAAGCAGACTTAATGGGAATTATTGTACCGCCTATTTGGCATGTGCACCTTTTCAAACAGCATTACACTAGTAAGAATCTATCATGCTAAGCAGCTGCTCAGAGTTTACTTCTCCAGCAGGTACAAAGACCTTAAAGCACTCGAGTGAAAATCAGAACGAGAGGAGAACTAACCGTCAACGTCATTCAGTCGTCTATCTGGGGAAAAAAAATGTTGCATCACTTTACAATCTTACTCAATTACTACTGGGTTACTATGTGGGAATAATCTGTGTAATACCATTTTAGTCTCTTGAAAAATAAAAGAGCGAGAACAAATGGTTAGTGTTAGGCCTACTACTACCTGACTGCAGTAGTTCACCTGGTAAAAAGTATCCTGTAGTTACTCATGTAAGGTGTAAAGTGAGGCCAAgtttgttttccttttttttacataatacgcacatacacacactaacagtGCTGAAAGTGCTTAAACACAGATATATGTGAAAGTTCAAGCTCTATATTACATATTTGCTGAAGTTTTAAAATGTACGTGAAATCCATAAATCCCCAGCATTGTGCATAAAACAGTGGTTCCTTTGTGAGTTAAATTACTATATGGGGGAAAAAAACGTAACATGAGAAGCCTTTAATTAAATACCAGCTTTAGAAAGagcagctgtaaaaaaaaaaaaaaattacaaaaaaatcaAGCACTGTCGGGTGAGCAAAATCTTTCCATCCTGCATACAAACAATTTAACATGAAACAAAAAAAGGGGGATTCCAATTTCAAACTAATGTACAGCTCTTGGAATTCTTTGGGTAAAGCATATAAAATGGACATGACGTCTCAAGGTAGTGTCATTCAGACAGTTCAACATACACTCACAACCAGCATTAGTTATATCCCTGAAGACTAGTACTACTTCAATCCCACACAGCATCTGAATGAACCTTTTTGAAAACGTCTGTATTATGAAAATTATACATTACAAAATGATAAAAGAAATAACAGGGCACATTATAAGTTGAGACAACCAACAAAGGCAGTGAAGGAGAAGTGCTTCCTCAATAAACCCCTTATTGAGGAGTAGCTAGACTACCATGGAATTTTCCGTCCTTTGTTGAACATTCTCACTCACTCTGACTGATGACATCACAGGAATCACAGAAATAGAATGCTAAAAATAGCATTGTTAGAACTCCTCTCTCCAAGGCAAGCGGTGATCTAATGACATCAcaggggtagtgagacagactgCTGTGAACCTGCCAGCTTCCTAGAGAACAGTAGAGACGTTTGCCTATTAACCATATGACaggttgaggagaggagtggagaggttcTGGAAGGACATAAGGGGACAGCTATAATGCTGTACATCAGAGTTCAGTGCTGGTGGGAAAGTTAGAGCCAGGCTTCAGCTCTGAGACATTGGGCCCTATTCAATCAAAAGTGCTATCCTGGTATCGAAGATAAAATGGACATTCTTCCTACACAGCGAGAAAGCATATTTGAGATGAGTAATTGTTACACGCTGTAAAAATTTTACTGAGATAATTCATCCAAACATGCATTGACAGTGAAAGAATAATGGTGGTTTTCACATCCTGGAAACCCGGTTACTGGGCCCCAAGTCACATAAGGCCAAACTGTGGTTACAACCATGTATCCACAGGGTATAATGAACTGGTTAGGGTTGGTTCAACCAGATTCCTCAGAATCCTGGTTCAGAAGGCCTGCAGGAAATAGAACACTTAACAGTTgaattttgtaaaaaaataaaataaaaaaaaatgtgtataatGAAACTGAACCGTTGTGTGAAGGTATCTGGGTGCTGCGGGGGATATGGGAATCAGTGGGTCACTGCAGCACAGGTTATAGGGTCAGAGTTCATCTCTTGCTTCCCTTCATATAGGAAGGGATGGCTCCCCTGGCTGTCAGGCCCTCGAATCGCTTGTAGGTGTAGTTGATGAAGACCCAGTCCTTATTTTTATAGTCAGCctccgctgctgctgctgctgctggagaCTTGGTGG

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase 38

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1670005 True 2357 lncRNA 0.39 2 50708935 50711323

Neighbor

gene id symbol gene type direction distance location
kctd20 LOC106565116 coding upstream 106 50702162 ~ 50708829 (+)
LOC110494953 LOC106565294 coding upstream 11073 50665178 ~ 50697862 (+)
LOC110494982 LOC106565312 coding upstream 44255 50658041 ~ 50664680 (+)
LOC110494989 LOC106565121 coding upstream 165769 50510419 ~ 50543166 (+)
ldlrad2 LOC106565124 coding upstream 208849 50483057 ~ 50500086 (+)
LOC110494040 cept1 coding downstream 17718 50729041 ~ 50748688 (+)
trnaa-ugc-133 NA coding downstream 29285 50740608 ~ 50740681 (+)
dram2b tmm77 coding downstream 42548 50753871 ~ 50758745 (+)
LOC118936400 NA coding downstream 105099 50816422 ~ 50819052 (+)
LOC110493204 NA coding downstream 114140 50825463 ~ 50829199 (+)
G1459693 LOC106565117 non-coding upstream 58688 50644899 ~ 50650247 (+)
G1459595 NA non-coding upstream 76565 50585636 ~ 50632370 (+)
G1459681 NA non-coding upstream 126444 50582195 ~ 50582491 (+)
G1459666 rl10a non-coding upstream 130266 50578017 ~ 50578669 (+)
G1459679 NA non-coding upstream 132791 50575856 ~ 50576144 (+)
G1459756 NA non-coding downstream 49709 50761032 ~ 50761269 (+)
G1459764 NA non-coding downstream 59722 50771045 ~ 50771281 (+)
G1459771 NA non-coding downstream 66436 50777759 ~ 50778334 (+)
G1459792 NA non-coding downstream 99479 50810802 ~ 50811017 (+)
G1459793 NA non-coding downstream 101181 50812504 ~ 50812726 (+)
atxn7l2a LOC106565127 other upstream 273229 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 525239 50181045 ~ 50192699 (+)
G1458807 NA other upstream 1269606 49439006 ~ 49439329 (+)
erc2 LOC106583361 other upstream 1668579 48866589 ~ 49040356 (+)
bsnb LOC106565168 other upstream 1987691 48693321 ~ 48814670 (+)
G1459769 NA other downstream 65206 50776529 ~ 50777072 (+)
LOC110494047 btg2 other downstream 183617 50894903 ~ 50897444 (+)
G1460249 LOC106565103 other downstream 368809 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3462691 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3545058 54256327 ~ 54264616 (+)

Expression


Co-expression Network