G1460171


Basic Information

Item Value
gene id G1460171
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 50946778 ~ 50950543 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1670549
cattccaGAACCAGGAGGACAACAACATGAGGCCTCAATTTACTggatgagccccccccccccccccccccccccccctcctcctctcccctgcaggACCACAACTCCAAGACCAACCGTACccctccttctcatctcctctccccctcctttccctccGCTCCTCCCTTCTCTCATCGCTCTGGTTCCATTTCTAGTCCCTTCGTTTCACTCCTACCCTCTTGGTATACacagatctgagaggattggataggTGTGAGCAATATGTCCGAATATGGAGCCATCACCACAATGCTTCTAAATGTCCAATTTTCTCGGATCTGCGTACATGGAATGAGTAGAGGCTAAGAGAAGGGGCTGTCCTGTCATCTTCAGCTCACcttccttttcttttttttctttagcTATCTAAGATCCCTACATTTTACTCTTTAAAAACACCCGCCCCCCCCCTACGTGATTCTGTTCTTGTAAAGAGTGTGAAAAATTATGATTTGCACTGTTTGAATTGTTTTGGTATGCATTTTTTTACACCGTGTACTTCAGGCTGGATAATGTTGACTCTTGACAGTCACCCACTGAGTAGTTATTGTTTGCATTGActgttgtttattttgtatatatatatatatatatatatatatatatactatacttGTACAGTGTGGGTCTGATTGGATGAGATTTGGGTCAATGAGGTAATATATTTTCACTTGCTCAAATGATTCATGTTAGCCTGTCATTCAAAGTTAAAACtactcacacagacactcactcatTCTGTCAACTAACCTGTAGCTTCACAGCTGTTCCCATAGCGACATGGTGGCCATTTTGGCTCTTAACCTGATCAGGTGATCAGCTCTGACCAATTATTTGTTGAGATTTATTGGATACAGTCATTTCTCCTTTCTCTTGCATGTTTAACCTAACTGAAAGGAAAAGCATTCCACTACAATCTGAAGGATTTAATACACAGGCCAGCTCACAAGTTAGCAAaactgagatatatatatatatatatatatgacattacAGGAAATTGTTCCATGTTGATGCAACATAAATCAATAAAGTTTCACGCAGGTTCGATATCCTTGACAATAAGTAAACCAATGTGACGGTCTTAAGCAAACATGTacaccttagtgctgcttttcaAACCGCTTGTCTCATATCACAGTCAACGTCTGTTCCAATTCCAAATGCAAAACAATGTAATATAAGATTTGATATCGTGTTATTTGGGCTAGATTTGGACCCTGCTTTGAGTTGTACATATTCTCACCAATATCAGTTTGCAACATTTTACTTGAACCCTCCTTTTAAAAATCCTACGTGACACTGTCTCGTATAACATGTTTATAAGGCCAAATTTGACTCTTAGTGTTTAGGTTTTCTCTTCATGTCTTAACTTTTGAACATAACCACCAACAAAAAAAAGATGCAATACAACAATTCAATACTAAAATCAGCAGTATGCTCTTTAAAAACATCTCATAGAGCACAGAAAGGATGTAACGCACACAATATCCAACTTGTATATTTTTTCTCCGATTATTCACTCCCCTGAATATGAATCTAGCCATTGCCTCCACTAACAGTTCCTCCCTGTTGGATGTGGAGGTTTCAGCTCAGCTTTTAGTTTAGTGCCATGTACTGTACTTTAGCTATAGGGTGCATACTAGTAGTCTACTGTTGcttccccccccccttttcccctTTCCTACATTCACACAGATATGAAAGAACTAGACTGGTTAAAAGAGGCATCCATCCACCATATTGCTTTCACACGTCCTCTCTGTCCAGATCATTTCAGGTTGAGCCGTGGAGTTGAGCCGAGGAAGTCCATTTTAGAGTATTGAGATGCATCCCTGGTCCCGTTCTTCACTTCAACGCCACTCTATAGGCTTAATACCTGTTTAAGGTTGCTAGTCGTTATTTGAAGTTGGACGTTTGCACCTGACAGAATGTACCATTGGTGAATTGGCTTGTTTAACACAAAGTAAAAATGGTATTGTCTCTAAAATGAAGTGAAAGGTGTAATTTGTTCCACGATGCACCTGGCTACAGTGACTGACAGTGATGTGTTATTGGTTAACAGTAACGGTACCTCTTCGTCTTGGTTTCTCTGCCTGAGAATAGGAGTCTCTCACCTTATGCTGAACAGGCCTGGTTGTGTTGGGTTTTATGTGTGTGGGTTCAAGGGAAGtcgggtgccagtctgtttctgctctcttggcAATTCCTTATGGAATTGTCATGCAATGTTTAGATTGACAATGGAGTTGGCAAAAGCGCAAACCGATCGAGGACCAGGCTAGGTTCAGAgtacagtgaaacagagagaacTCACATCATGACTGTCTGCTGGAATTATCTCagcctttattttattttttatttaattttttaaatgtaaaaaaaaaacattttggtttCAGTTTCATGTTAATAATACACCTGCTTTTTGGGAGAATATACACATTCCTGATGAAAAGGAATCAGTACTAAGAAACAGAGCTCTATGTACTAGTTGTTTTTAATCCTTTCAGATAGGGTCTTGTACATAGCGACTTTGAACCAAAACAACTCTCCTGAATATCAGGCCTGATGAATATGGCTATTCTTTTAATACAAAACTACACACACTTTTCCTACAGCGGCTGTCTGCAGCCGT
>TU1670551
cattccaGAACCAGGAGGACAACAACATGAGGCCTCAATTTACTggatgagccccccccccccccccccccccccccctcctcctctcccctgcaggACCACAACTCCAAGACCAACCGTACccctccttctcatctcctctccccctcctttccctccGCTCCTCCCTTCTCTCATCGCTCTGGTTCCATTTCTAGTCCCTTCGTTTCACTCCTACCCTCTTGGTATACacagatctgagaggattggataggTGTGAGCAATATGTCCGAATATGGAGCCATCACCACAATGCTTCTAAATGTCCAATTTTCTCGGATCTGCGTACATGGAATGAGTAGAGGCTAAGAGAAGGGGCTGTCCTGTCATCTTCAGCTCACcttccttttcttttttttctttagcTATCTAAGATCCCTACATTTTACTCTTTAAAAACACCCGCCCCCCCCCTACGTGATTCTGTTCTTGTAAAGAGTGTGAAAAATTATGATTTGCACTGTTTGAATTGTTTTGGTATGCATTTTTTTACACCGTGTACTTCAGGCTGGATAATGTTGACTCTTGACAGTCACCCACTGAGTAGTTATTGTTTGCATTGActgttgtttattttgtatatatatatatatatatatatatatatatatatatatatactatacttGTACAGTGTGGGTCTGATTGGATGAGATTTGGGTCAATGAGGTAATATATTTTCACTTGCTCAAATGATTCATGTTAGCCTGTCATTCAAAGTTAAAACtactcacacagacactcactcatTCTGTCAACTAACCTGTAGCTTCACAGCTGTTCCCATAGCGACATGGTGGCCATTTTGGCTCTTAACCTGATCAGGTGATCAGCTCTGACCAATTATTTGTTGAGATTTATTGGATACAGTCATTTCTCCTTTCTCTTGCATGTTTAACCTAACTGAAAGGAAAAGCATTCCACTACAATCTGAAGGATTTAATACACAGGCCAGCTCACAAGTTAGCAAaactgagatatatatatatatatatatatgacattacAGGAAATTGTTCCATGTTGATGCAACATAAATCAATAAAGTTTCACGCAGGTTCGATATCCTTGACAATAAGTAAACCAATGTGACGGTCTTAAGCAAACATGTacaccttagtgctgcttttcaAACCGCTTGTCTCATATCACAGTCAACGTCTGTTCCAATTCCAAATGCAAAACAATGTAATATAAGATTTGATATCGTGTTATTTGGGCTAGATTTGGACCCTGCTTTGAGTTGTACATATTCTCACCAATATCAGTTTGCAACATTTTACTTGAACCCTCCTTTTAAAAATCCTACGTGACACTGTCTCGTATAACATGTTTATAAGGCCAAATTTGACTCTTAGTGTTTAGGTTTTCTCTTCATGTCTTAACTTTTGAACATAACCACCAACAAAAAAAAGATGCAATACAACAATTCAATACTAAAATCAGCAGTATGCTCTTTAAAAACATCTCATAGAGCACAGAAAGGATGTAACGCACACAATATCCAACTTGTATATTTTTTCTCCGATTATTCACTCCCCTGAATATGAATCTAGCCATTGCCTCCACTAACAGTTCCTCCCTGTTGGATGTGGAGGTTTCAGCTCAGCTTTTAGTTTAGTGCCATGTACTGTACTTTAGCTATAGGGTGCATACTAGTAGTCTACTGTTGcttccccccccccttttcccctTTCCTACATTCACACAGATATGAAAGAACTAGACTGGTTAAAAGAGGCATCCATCCACCATATTGCTTTCACACGTCCTCTCTGTCCAGATCATTTCAGGTTGAGCCGTGGAGTTGAGCCGAGGAAGTCCATTTTAGAGTATTGAGATGCATCCCTGGTCCCGTTCTTCACTTCAACGCCACTCTATAGGCTTAATACCTGTTTAAGGTTGCTAGTCGTTATTTGAAGTTGGACGTTTGCACCTGACAGAATGTACCATTGGTGAATTGGCTTGTTTAACACAAAGTAAAAATGGTATTGTCTCTAAAATGAAGTGAAAGGTGTAATTTGTTCCACGATGCACCTGGCTACAGTGACTGACAGTGATGTGTTATTGGTTAACAGTAACGGTACCTCTTCGTCTTGGTTTCTCTGCCTGAGAATAGGAGTCTCTCACCTTATGCTGAACAGGCCTGGTTGTGTTGGGTTTTATGTGTGTGGGTTCAAGGGAAGtcgggtgccagtctgtttctgctctcttggcAATTCCTTATGGAATTGTCATGCAATGTTTAGATTGACAATGGAGTTGGCAAAAGCGCAAACCGATCGAGGACCAGGCTAGGTTCAGAgtacagtgaaacagagagaacTCACATCATGACTGTCTGCTGGAATTATCTCagcctttattttattttttatttaattttttaaatgtaaaaaaaaaacattttggtttCAGTTTCATGTTAATAATACACCTGCTTTTTGGGAGAATATACACATTCCTGATGAAAAGGAATCAGTACTAAGAAACAGAGCTCTATGTACTAGTTGTTTTTAATCCTTTCAGATAGGGTCTTGTACATAGCGACTTTGAACCAAAACAACTCTCCTGAATATCAGGCCTGATGAATATGGCTATTCTTTTAATACAAAACTACACACACTTTTCCTACAGCGGCTGTCTGCAGCCGT
>TU1670548
tgTGAGCGAATGTGTGATTTTGGATGAGTGGGTGGTGTGTCGTTCCCAGTGGTTAGTACTTCCTGAAATACTATGGTGCGCCATTCTCAGTTCTGAAATACAGCTGCAGTTGAGAAGCTCAAAACTGTTAAGTTTCCTCGCTCTCTTAATAcattatccagagtgacttacaggagaacTTAGGGCACATTGACTGATTTTTCACTaagtcggctctgggattcgaacaaacaacctttcggttactggcccagtgctcttaactactaggctacctgctgtatTCATACATAAAATACATGAAACCAGGCTGACCAATTGCCTAATGAAAGACCAATAAGGCCACATGAACATATTAAATATATAGTTTCATATTGGCACATATTGAAATATTTCCATGAACCTCTTTGCAGTGAACTACAGTAAACCAATCTCTGCTCCATGATCCCAGCATAAGGAGGAGAGTGATCCACAAAACTCTTGAATCAAACCTCCAACCTGCTGTTGGTGGAGCTCCCACGGACAAGCGACATGGTTAGCCAGTTGAACTAAAGGCCACAGTGTGaatgtacaacaacaacaaaaaaacaacgtCTGATCTTTGCAATTTCTTCTTTTGAACTATTTTTTGATTTGAGTTGATGTGGTCGACGAGGTGGGACAAAACACAAAGTCCAGGTGTCTCTGTCATCATGAGGACCCACGTGACTTTAATTCATGTATCTTCATTTTCTGTCCTGTCAGTGACCACTCTGTATGTGTCGCTATTGTTATCTTGAGATGAAGAATAAAATAAAACTGTCCCACTCTGTAAACc

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1670549 False 2683 lncRNA 0.40 2 50946778 50949592
TU1670551 False 2693 lncRNA 0.40 2 50946778 50949592
TU1670548 True 817 lncRNA 0.41 1 50949727 50950543
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110494047 btg2 coding upstream 49334 50894903 ~ 50897444 (+)
rbbp5 LOC106565113 coding upstream 85680 50852607 ~ 50861098 (+)
LOC110494043 LOC106565114 coding upstream 106374 50837015 ~ 50840404 (+)
LOC110493204 NA coding upstream 117579 50825463 ~ 50829199 (+)
LOC118936400 NA coding upstream 127726 50816422 ~ 50819052 (+)
apobec2a LOC100196684 coding downstream 102139 51052682 ~ 51062761 (+)
csf1 csf1 coding downstream 650890 51601433 ~ 51640412 (+)
LOC110494059 nfasc coding downstream 1016496 51967039 ~ 52121978 (+)
LOC110494060 LOC106565094 coding downstream 1240056 52190599 ~ 52273991 (+)
LOC110494061 LOC106565309 coding downstream 1323711 52274254 ~ 52280244 (+)
G1460201 NA non-coding upstream 5518 50940758 ~ 50941260 (+)
G1460202 NA non-coding upstream 13255 50931442 ~ 50933523 (+)
G1460203 NA non-coding upstream 15450 50930038 ~ 50931328 (+)
G1460205 NA non-coding upstream 18620 50927552 ~ 50928158 (+)
G1460190 NA non-coding upstream 39832 50906743 ~ 50906946 (+)
G1460215 NA non-coding downstream 9573 50960116 ~ 50960438 (+)
G1460214 NA non-coding downstream 10248 50960791 ~ 50961101 (+)
G1460219 NA non-coding downstream 21995 50972538 ~ 50972851 (+)
G1460228 NA non-coding downstream 39364 50989907 ~ 50990506 (+)
G1460247 NA non-coding downstream 75777 51026320 ~ 51044188 (+)
G1459769 NA other upstream 169706 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 511072 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 763082 50181045 ~ 50192699 (+)
G1458807 NA other upstream 1507449 49439006 ~ 49439329 (+)
G1460249 LOC106565103 other downstream 129589 51080132 ~ 51137770 (+)
G1464092 LOC106565344 other downstream 3223471 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3305838 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 3521162 54471705 ~ 54474472 (+)
G1466124 NA other downstream 5046105 55996648 ~ 55998347 (+)

Expression

G1460171 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 75.
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G1460171 Expression in each Bioproject

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G1460171 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network