G1460330


Basic Information

Item Value
gene id G1460330
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51213462 ~ 51215222 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1670732
CACAAAAAAGTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTTTGtactgtattatccctttctttactctactgtagtatccctttctttactctactttgtactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactcTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTATTATCCCTTTctttactctact
>TU1670734
CACAAAAAAGTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTTTGtactgtattatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtattatccctttctttactctactttgtactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactcTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTATTATCCCTTTctttactctact
>TU1670735
CACAAAAAAGTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTTTGtactgtattatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtattatCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACT
>TU1670738
CACAAAAAAGTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTTTGtactgtattatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtattatccctttctttactctactgtattatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtattatCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACT
>TU1670739
CACAAAAAAGTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTACTCTACTGTAGtatccctttctttactctactttgtactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtattatccctttctttactctactgtattatccctttctttactctactgtattatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtattatccctttctttactctactgtattatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactctactgtattatCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTAGTATCCCTTTCTTTACT
>TU1670742
CACAAAAAAGTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTAATCTACTGTATTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTGTAGTATCCCTTTCTTTACTCTACTTTGtactgtattatccctttctttactctactgtagtatccctttctttactctactttgtactgtagtatccctttctttactctactgtagtatccctttctttactctactgtagtatccctttctttactcTACTGTAGTATCCCTTTCTTTACTCTACTTTGTACTGTATTATCCCTTTctttactctact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1670732 False 360 lncRNA 0.33 4 51213462 51215222
TU1670734 False 435 lncRNA 0.34 3 51213462 51215222
TU1670735 False 462 lncRNA 0.34 2 51213462 51214669
TU1670738 False 562 lncRNA 0.34 2 51213462 51214669
TU1670739 False 737 lncRNA 0.34 2 51213462 51214669
TU1670742 True 335 lncRNA 0.33 4 51213462 51215222

Neighbor

gene id symbol gene type direction distance location
apobec2a LOC100196684 coding upstream 150701 51052682 ~ 51062761 (+)
LOC110494047 btg2 coding upstream 316018 50894903 ~ 50897444 (+)
rbbp5 LOC106565113 coding upstream 352364 50852607 ~ 50861098 (+)
LOC110494043 LOC106565114 coding upstream 373058 50837015 ~ 50840404 (+)
LOC110493204 NA coding upstream 384263 50825463 ~ 50829199 (+)
csf1 csf1 coding downstream 386211 51601433 ~ 51640412 (+)
LOC110494059 nfasc coding downstream 751817 51967039 ~ 52121978 (+)
LOC110494060 LOC106565094 coding downstream 975377 52190599 ~ 52273991 (+)
LOC110494061 LOC106565309 coding downstream 1059032 52274254 ~ 52280244 (+)
LOC110494062 LOC106565093 coding downstream 1076004 52291226 ~ 52298261 (+)
G1460249 LOC106565103 non-coding upstream 75692 51080132 ~ 51137770 (+)
G1460247 NA non-coding upstream 169274 51026320 ~ 51044188 (+)
G1460228 NA non-coding upstream 222956 50989907 ~ 50990506 (+)
G1460219 NA non-coding upstream 240611 50972538 ~ 50972851 (+)
G1460214 NA non-coding upstream 252361 50960791 ~ 50961101 (+)
G1460413 NA non-coding downstream 95732 51310954 ~ 51311175 (+)
G1460414 NA non-coding downstream 96196 51311418 ~ 51311754 (+)
G1460421 NA non-coding downstream 107978 51323200 ~ 51323428 (+)
G1460429 NA non-coding downstream 117506 51332728 ~ 51332948 (+)
G1460443 NA non-coding downstream 135799 51351021 ~ 51351304 (+)
G1459769 NA other upstream 436390 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 777756 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 1029766 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 2958792 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 3041159 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 3256483 54471705 ~ 54474472 (+)
G1466124 NA other downstream 4781426 55996648 ~ 55998347 (+)
G1466131 NA other downstream 4800355 56015577 ~ 56016613 (+)

Expression


Co-expression Network