G1461060


Basic Information

Item Value
gene id G1461060
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 51704391 ~ 51707336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1671503
AGAAGGTTTTCCTAAAGCAAGCATATGATTTTTCACTTTTTTATTTGCATAGTTCAAGCATTTTGTGTATTTTTCGCCAAAATAGCAACAGTTGATGTTATTATTAAGATATACGTAGTTGAAATGGGAAATATGTACATAGACCAATGTGCTAAATCTTTCCACATCATTATTAGCCATAAATGCTACATTTTTTATCAAATATTGGACACCCCGTATTTGGCTGTTTTGTGTTTCTCAACACATTATGAGGCCAATTGTTCCAAAAATACCAATATTTTCAAAATCATCTTTAAACCAGGGTCTTCAAGACAAATCTTAAAagcaaattaaaaaaatattttagcaATAATCATTTTCCCCCAATATTGTGAAAAACGCAAAACATTCCTGATTACATGCTAAAAATGTAACCTGTCGGCTGAAACCTTATTTTAGTCATCAAATACCCATGAGtctaaaaaaatatgtactgcaTCTTTTGACCTTAGTTGTCCCTTTCTCAAACAAgaaaaaaatataactattttcttcagacttttttttattttttataataataatctGCTGTATACACTAATGTTTCCCTTGCCTCCAAACATGATGGCTTGAGTCTGAAGAAAGACATCCTCTTATACAGACACAGCATTGCCTCTGAGCCAATATTACAAAGGGGGAGAAACGAATGGATGGAGGAAaaaagacagagaaggagagatgggtgGATTGCGAGGGAGGAATGTAGACAGGAATAGAAAGGGCTGCGCTTTCAGAGGGCCACAGGTTCAATCTGGAGACGCTAACAGTGATCGACTGACAAACAAAATGTTCCTTATTAAGAGACAGCCAAAATGCAAAGGATGGGTCGGCAACTTATATTAGAGGACAGGAGGACGACGAGGATGTTGCACATACCTGCACCATGATACATCCTCCACTTAGAATGTGGAGTGACTTGTCATATACGTGTATAATATATGAGCTCCTCCAACCCTGACCAGGACAGCAATATGTCTATATATTTCTGTGTCTATCTATCTCTCACCCAAAGTGGTTGATCACGTTAGAAGTGATGGTTCATAGAAAAATAATTAGATGTATTTTGAGAGGTAAAAACGTATTGATCAGAATAAACGATCTCTATATGCTAAAAAAGGTTCAGTCTTCAACATAGCACTGTATAATATTAGGGATATGATACATGTAGGATGCATTTAGCTTTCTGATATGTACACACTGTAAGTTGGCTGTGATGCAGGTTGCTGGCCCATCTTAACACAAACAAGTGTTTCAACCAGCAGACTTATTCTAAGgtcacttctttttttttttactgacgtCTTTCcacatactatatactgtactgtatatatatatatgtatatatataaatgtagatATAGAGAGATTTTATCTACACATGTATCTATTgacatactgtaccactgaaGTAAGGTCTTATAGCAGTGAGAGAACTAAGAGGAGTCCAATGGCTTTAATGCCAATGGTGTGTGGGCTGTACTCACATCAAGACACACAGTTACCAGAGAACTAACAGCGGTTTCAGAGTGAGGCAGGATAGGTCTTCCTgcagacagtcacacacatacacatataggTCCCAACCAGCCCTGGGTGTAGGACGGGAAAGGGGACAGAGGGGGTGTAGCCTAGCCTGGAGAAAAGGTTGGGAGGCAGGCGTCACAGTGGGTTGGGTGTTCAATAGGTGTGTTCCTCACCTGGGATGAGAGGTGTTGGAAGGAATCGAAGGGAGACTCATGCAAACACTGCTGTACACCAATTTCCTGCGACCACtgtattgagggggggggggtactttcaTACAGTACAGCTCTCCCACTAATGGCCTCTGAAGACGACGCCAGGAAGTCGAAGGGCAAGGGCTGTTTAACTGAGTTTGAAACAATTACCTAGGAGCCAATCAGAGACAAAACAACATTGGCCATTTCCTGTTGTGTCAGGGTTTCCCCAAACTCGatgTTATGTTACTGTTCCCACTCCTATCTCTCTTTATGGTTCTTGAACTACCATCTGTCCGTCTCCTCTTCTGTGACCATTTCCTGTTACACTGTAACATCAGCCTCTGATTGGTTCTACTGCTCTCTGCACCAATAAGAAGCTCTCACTCCCCAGTCCCTCTTCCTGAAGTCCAGCACCGGCAGTCCTAATCCCTCTTCATCTTAACAGAGATCCGTGCATCACGTACGTTAAGTCCCCTCCTGAACCGTTCAGTCACAGAACTCTACTGTCCTGGGCTTCTAGTCTCTGTGGACCTTCTAATCTCTCTATAGCATACACCTTTCCTGAGCTGAGTAACGGAGAAAAACTGTTGAAACAGTCTCACTGTCAGTGTAGCATGGAGGAGAGCATGTTTGAGTGCTGTATACACCCCCTGGTTTCTGGCTAGCTTAGTAGTATCAAATGCTGTGTCAAACGCATCATCCCCAAAATAGTGAAACATGACAGCATTGTGTTTTATTTGCATTTGTTTAGTTTGCGTTACCTGCCCTTACAGAGAAGCTATTTTCTGCCAGGCCTAGACTAAGAAGAATTGTGTAAGTGTGgtgaaggatagagagagagtggagggagccGTTATAGACCCCTTGTGGTGGGAGGTGTGGGCCTCCATCATAGTCTGTTTGCCTTGAAAAAGTCCTCAGGTGGTCAACTTCCCAAACTTCCTGTGACCGCCTCATGTTTCCGGTTGTGTTGTTGTGGAGGTCATTGGGTTTATACACCGGCGGGCAGATGGTCTGGGAGATTAACCAGTTTCTTTGGGCATTTTTTTTATATTCCAGTGGATCCTCAGAAGGACGCTCCGTCAAACTTGACGGCAGCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1671503 True 2864 lncRNA 0.42 2 51704391 51707336

Neighbor

gene id symbol gene type direction distance location
csf1 csf1 coding upstream 63979 51601433 ~ 51640412 (+)
apobec2a LOC100196684 coding upstream 641630 51052682 ~ 51062761 (+)
LOC110494047 btg2 coding upstream 806947 50894903 ~ 50897444 (+)
rbbp5 LOC106565113 coding upstream 843293 50852607 ~ 50861098 (+)
LOC110494043 LOC106565114 coding upstream 863987 50837015 ~ 50840404 (+)
LOC110494059 nfasc coding downstream 259703 51967039 ~ 52121978 (+)
LOC110494060 LOC106565094 coding downstream 483263 52190599 ~ 52273991 (+)
LOC110494061 LOC106565309 coding downstream 566918 52274254 ~ 52280244 (+)
LOC110494062 LOC106565093 coding downstream 583890 52291226 ~ 52298261 (+)
zc3h11a zc3h11a coding downstream 634721 52342057 ~ 52363993 (+)
G1461036 NA non-coding upstream 40318 51662056 ~ 51664073 (+)
G1460997 NA non-coding upstream 128339 51575770 ~ 51576052 (+)
G1460981 NA non-coding upstream 135959 51568216 ~ 51568432 (+)
G1460787 NA non-coding upstream 173737 51423155 ~ 51530654 (+)
G1461150 LOC106565097 non-coding downstream 167032 51874368 ~ 51876383 (+)
G1461152 NA non-coding downstream 176901 51884237 ~ 51888844 (+)
G1461227 NA non-coding downstream 285712 51993048 ~ 51993827 (+)
G1461178 NA non-coding downstream 339362 52046698 ~ 52095402 (+)
G1461181 NA non-coding downstream 395156 52102492 ~ 52102997 (+)
G1460249 LOC106565103 other upstream 613502 51080132 ~ 51137770 (+)
G1459769 NA other upstream 927319 50776529 ~ 50777072 (+)
atxn7l2a LOC106565127 other upstream 1268685 50427145 ~ 50437612 (+)
LOC110494957 qrich1 other upstream 1520695 50181045 ~ 50192699 (+)
G1464092 LOC106565344 other downstream 2466678 54147039 ~ 54189617 (+)
LOC110494100 LOC106565348 other downstream 2549045 54256327 ~ 54264616 (+)
LOC110494110 LOC106565356 other downstream 2764369 54471705 ~ 54474472 (+)
G1466124 NA other downstream 4289312 55996648 ~ 55998347 (+)
G1466131 NA other downstream 4308241 56015577 ~ 56016613 (+)

Expression


Co-expression Network