XLOC_003387 (zgc:173545)


Basic Information

Item Value
gene id XLOC_003387
gene name zgc:173545
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 18157260 ~ 18158883 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006638
ATGGCTGTGATGTCATTCGGTTCTTTAATTGCTGGTCCAGAGGCCTTTTCTGATTCTGGTGCAAATCGAGCAGTCTCTGGAGACACAATCCATTTTGGCAAACTTTTAATTGGTGGTCAAAGTGTTGaacctaataataaaaaagacaaatccAGACCTGCTTCAGCTGAACAAACAATTGAGGATGAACGGTTCCGGCTGGCAAGAGCTAAACTGCAACGACTGGGTCCTTCTCTACAGTGTGGGAATGATTCAATGACCTTAAATATTAAAGGACACAGAACACCACACTTTCTGGTTGAGAGAGGAGAGGGTTCACCAGTGTCTTTGTCTGAGATGCCAGCCAGCTGTGGGTTCTCACTGAAGCGGGTACGCAGGGATGTTTCTCTTGTTGCTCCATACACTGGTTGTAACGTCAGACAACAGGGTGGTAGTTATGTTCTGCCACTCATTATAATGGGGGCTCCAGTGCAAATGTCCTGCCCTGTGAGTCCTCGCCTTCCTGTGGTGTCCTGCACCACATCCTCCATGTGCTCATTTACTCTGGATAATGTTGGTGGCTCAATGGTTTTGACAGCACCGTTTACAGGAAGCTGTTGGGATAGTCAGGACACTGACTGGAACTTGACTTTGCTGTTGGGAGACCGAGAAGTGGTTCTTTCCTGTCCGAAGGCAACAGACTCCACACCGACTGTTCCCCCAACACCATTTCCTCTAGGGTATCCATATTTCCCATTTGGATACCCCTGGTGGTACCCTTGGAACCAGGCTCCTCCTGTTGCACCCCCCACAACTCCTGCTCCAGTTCAAGCCCCTGTTTACAGTCCATTTCCAATGTATTACCCTTATTACTTTGGAGGTTTCCCTCACCGACGAAGGCACCATCATCGGCACCATCATCGGCACTGGTACCCTGAGTCTCAAGAGTCCTGGTACCCTGAGTCTCAAGAGTCCTGGTACCCAATGTTGCCTCCTAATGAATTTGCACCATTCCAACCACCACCCACCCCAGCTGCCCCCCAGATTCCACAGTATCCAGTTTTTCCAATGCCATTTAACCCAGTGAACACTGGTTTTAAAAACCCCTTCCGGCCTCCGGTACCTCAGTCAGTCTCTAATCCTCAAAGTCTTAATTCTCCTTGGAACATCTGGGCTCGCAAACAGAAGAGATGA

Function

symbol description
zgc:173545 Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space.

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0006955 immune response biological_process
GO:0009615 response to virus biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0008009 chemokine activity molecular_function
GO:0031726 CCR1 chemokine receptor binding molecular_function
GO:0031729 CCR4 chemokine receptor binding molecular_function
GO:0031730 CCR5 chemokine receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080215-6 Predicted to enable chemokine activity. Predicted to act upstream of or within immune response. Predicted to be located in extracellular space.

Ensembl:

ensembl_id ENSDARG00000092026

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006638 True 1173 mRNA 0.49 6 18157260 18158883

Neighbor

gene id symbol gene type direction distance location
XLOC_003386 zgc:175135 coding upstream 25194 18130300 ~ 18132066 (+)
XLOC_003382 rpusd4 coding upstream 75396 17964689 ~ 18081864 (+)
XLOC_003385 zgc:175135 coding upstream 102126 18053333 ~ 18055134 (+)
XLOC_003384 zgc:175135 coding upstream 117677 18037729 ~ 18039583 (+)
XLOC_003383 si:ch211-14i3.2 coding upstream 126357 18023465 ~ 18030903 (+)
XLOC_003388 zgc:173545 coding downstream 17010 18175893 ~ 18177499 (+)
XLOC_003389 LO018315.6 coding downstream 24337 18183220 ~ 18200701 (+)
XLOC_003390 tmcc1b coding downstream 46883 18205766 ~ 18244561 (+)
XLOC_003391 ncoa3 coding downstream 453283 18612166 ~ 18699569 (+)
XLOC_003392 BX296530.1 coding downstream 517559 18676442 ~ 18676557 (+)
XLOC_003369 CR854846.2 misc upstream 2034178 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 5445264 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 5462997 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 5471661 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 5477232 12679732 ~ 12680028 (+)
XLOC_003381 NA non-coding upstream 193807 17956841 ~ 17963453 (+)
XLOC_003380 NA non-coding upstream 204702 17951563 ~ 17952558 (+)
XLOC_003379 NA non-coding upstream 225102 17930273 ~ 17932158 (+)
XLOC_003378 CR589944.3 non-coding upstream 237247 17919143 ~ 17920013 (+)
XLOC_003377 BX571952.1 non-coding upstream 643628 17440591 ~ 17513632 (+)
XLOC_003393 NA non-coding downstream 543479 18702362 ~ 18708059 (+)
XLOC_003394 NA non-coding downstream 582144 18741027 ~ 18742103 (+)
XLOC_003395 CU207354.2 non-coding downstream 674030 18832913 ~ 18833246 (+)
XLOC_003402 BX276115.1 non-coding downstream 1874183 20033066 ~ 20033185 (+)

Expression


Co-expression Network