G1464261 (LOC100196839)


Basic Information

Item Value
gene id G1464261
gene name LOC100196839
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54418130 ~ 54418396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1674953
GCTGCTGACCAGCTTGTTGAAGGCTGACATGTCAGGGTCTCTGGCCTGTGACCTAGGTGGCCCTGCACTGGGGCCTACACCGCCTGTTAGAGCCTGCTCCAAGTGCTCAGCCATGAAGGGCGTGCCACTGCTGGTGCTGCCTCTGATTCCTCCCCGATGCGGATTCTGGTGCAGTTTCCGATGAGACTGGTGGTTCTGCTCAGAGCCCACCTTTAGCCCCTTCAggcctccctccacctcctccagagAGAGCACTACACCAGAGTT

Function

NR:

description
eukaryotic translation initiation factor 4E transporter-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1674953 True 267 lncRNA 0.60 1 54418130 54418396

Neighbor

gene id symbol gene type direction distance location
LOC110494103 LOC106565350 coding upstream 33984 54363186 ~ 54384146 (+)
slc2a11a gtr11 coding upstream 56344 54350845 ~ 54361786 (+)
LOC110493214 NA coding upstream 99407 54317729 ~ 54318723 (+)
LOC110493213 NA coding upstream 101590 54302462 ~ 54316540 (+)
LOC110494098 rab37 coding upstream 142110 54265416 ~ 54276020 (+)
LOC118940476 NA coding downstream 7989 54426385 ~ 54434260 (+)
zgc:172271 LOC106565354 coding downstream 15965 54434361 ~ 54453753 (+)
sirt4 sirt4 coding downstream 34957 54453353 ~ 54461322 (+)
LOC110494110 LOC106565356 coding downstream 53563 54471705 ~ 54474472 (+)
frs3 LOC106565358 coding downstream 68664 54487060 ~ 54500326 (+)
G1464256 NA non-coding upstream 6665 54411240 ~ 54411465 (+)
G1464252 NA non-coding upstream 21828 54395318 ~ 54396302 (+)
G1464223 NA non-coding upstream 86105 54330258 ~ 54332025 (+)
G1464184 NA non-coding upstream 166852 54251040 ~ 54251278 (+)
G1464160 NA non-coding upstream 175825 54195807 ~ 54242305 (+)
G1464264 NA non-coding downstream 787 54419183 ~ 54419400 (+)
G1464263 NA non-coding downstream 2174 54420570 ~ 54420771 (+)
G1464262 NA non-coding downstream 3134 54421530 ~ 54421821 (+)
G1464265 NA non-coding downstream 3808 54422204 ~ 54422623 (+)
LOC110494100 LOC106565348 other upstream 153514 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 228513 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 3327241 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 3520686 50894903 ~ 50897444 (+)
G1459769 NA other upstream 3641058 50776529 ~ 50777072 (+)
G1466124 NA other downstream 1578252 55996648 ~ 55998347 (+)
G1466131 NA other downstream 1597181 56015577 ~ 56016613 (+)
LOC110494143 LOC106565389 other downstream 1669782 56088149 ~ 56127481 (+)
G1466224 gem other downstream 1800846 56219242 ~ 56220946 (+)

Expression


Co-expression Network