G1464615


Basic Information

Item Value
gene id G1464615
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 54622806 ~ 54624208 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1675346
tgttggttggaaaaagcatgtgaacccctaggctaatgacttctccaaaagctaattggagtcaggagtcagctaacctggtggcagggtagcctagtagtttgAGTGTTTtattagtaaccgaaaggttgcaagttcaaatccctgagctgacaaggtacaaatctctcGTTCTGCACcagaacaaagcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgtcttgcctagttaaataaaggtaaaatgaaaaaaacctggagtccaatcaaagagaggaaatgagatgttggttagagctgccttgccctataaaaaaacacgtaatttgagtttgctattcacaagaatcattgcctgatgtgaaccatgcctcgaacaaaagagatctcagtagacctaagaattgttgacttgcataaagcctTGATGTGCAAGATAAATGgtatataaatggagaaagtttggcactgttgctactctccctaggagtggctgtcctacaaaaatgactgcaagagcacagtgtagaatgctcaatgaggttaagaagaatcctagtgtcagctaaagacttacagaaatctctggaacatgctaacatctctgttgatgagtctttgatacgtaaaacactaaacaagaatgctGTTCaggggaggacaccacggaagaagccactgctgtccaaaaaaaacattgctgtacatctgaagtttgcaaaagtgcacctggatgttccacagtgctacttgcaaaatattctgtggacagatgaaactacagttgccTTGTTtgaaaggaacacacaacactatgtgtggagaaaaaagccacagcacaccaacattaaaacctcatcccaactgtaaagtatggtggaaggagcatcatgttttggggctgctttgctgcctcagggcctggacagcttgctatcatcgaccaAAAAataaattcccaagtttatcaagacttTTTGCAGGAGAAAGTTAGGTTACCTGTCCGCCAATttaagctcaacagaagttgggtgatgcaacaggacaacaacccaaaacacagaagtaaatcaacaacagaatggtttcaacagaagaaaatatgcatTCTGGACTGGCCcagtctcaattgggttgaggtcaggactcaacccgattgagatattgtggcatgacctcaagagagcagttcacaccagacatcccaagaatattgctgaactgaaacagttttgtaaagaggaatggtccaaaattcctcctgactttTGTGCAgatctgatccgcaactacagaaaacgtttggttgaggttattgctgccaaaggagggtcaaccagttattaaatccaagggttcacatactttttccacgcca

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1675346 True 1403 lncRNA 0.42 1 54622806 54624208

Neighbor

gene id symbol gene type direction distance location
slc6a11a LOC106565359 coding upstream 130 54592555 ~ 54622676 (+)
frs3 LOC106565358 coding upstream 122480 54487060 ~ 54500326 (+)
LOC110494110 LOC106565356 coding upstream 148920 54471705 ~ 54474472 (+)
sirt4 sirt4 coding upstream 161484 54453353 ~ 54461322 (+)
zgc:172271 LOC106565354 coding upstream 169053 54434361 ~ 54453753 (+)
eno1b LOC106565361 coding downstream 29224 54653432 ~ 54662827 (+)
rereb NA coding downstream 38921 54663129 ~ 54677374 (+)
iho1 ccdc36 coding downstream 89303 54713511 ~ 54717607 (+)
slc26a6l LOC106565505 coding downstream 108855 54733063 ~ 54742363 (+)
LOC110494114 LOC106565368 coding downstream 168735 54792943 ~ 54805426 (+)
G1464609 NA non-coding upstream 56758 54565785 ~ 54566048 (+)
G1464283 NA non-coding upstream 184868 54437651 ~ 54437938 (+)
G1464280 NA non-coding upstream 187774 54433557 ~ 54435032 (+)
LOC118940476 NA non-coding upstream 189523 54426385 ~ 54434260 (+)
G1464616 NA non-coding downstream 116 54624324 ~ 54627415 (+)
G1464641 LOC106565501 non-coding downstream 8886 54633094 ~ 54633537 (+)
G1464659 rnf223 non-coding downstream 66970 54691178 ~ 54694992 (+)
G1464668 NA non-coding downstream 82762 54706970 ~ 54707336 (+)
G1465118 NA non-coding downstream 364831 54989039 ~ 54989364 (+)
LOC110494100 LOC106565348 other upstream 358190 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 433189 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 3531917 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 3725362 50894903 ~ 50897444 (+)
G1466124 NA other downstream 1372440 55996648 ~ 55998347 (+)
G1466131 NA other downstream 1391369 56015577 ~ 56016613 (+)
LOC110494143 LOC106565389 other downstream 1463970 56088149 ~ 56127481 (+)
G1466224 gem other downstream 1595034 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 1956183 56575737 ~ 56584088 (+)

Expression


Co-expression Network