Gene
RNA
| Item | Value |
|---|---|
| gene id | G1464950 |
| gene name | ccdc36 |
| gene type | unknown |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 54716104 ~ 54717490 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ccdc36 | Predicted to be involved in homologous chromosome pairing at meiosis and meiotic DNA double-strand break formation. Predicted to act upstream of or within DNA recombination. Predicted to be active in condensed nuclear chromosome. |
| description |
|---|
| interactor of HORMAD1 protein 1 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1675706 | True | 1387 | TUCP | 0.56 | 1 | 54716104 | 54717490 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| c17h1orf159 | cssa12h1orf159 | coding | downstream | 11703 | 54698441 ~ 54704401 (-) |
| LOC110494135 | rnf223 | coding | downstream | 20618 | 54693191 ~ 54695486 (-) |
| si:ch211-157b11.14 | perm1 | coding | downstream | 25137 | 54676125 ~ 54690967 (-) |
| ppil1 | LOC106565501 | coding | downstream | 81722 | 54633082 ~ 54634382 (-) |
| tspo | LOC100136652 | coding | downstream | 236459 | 54473949 ~ 54479645 (-) |
| kbtbd12 | LOC106565366 | coding | upstream | 493 | 54717983 ~ 54735939 (-) |
| LOC110494132 | LOC106583563 | coding | upstream | 26035 | 54743525 ~ 54759271 (-) |
| LOC110494115 | LOC106565367 | coding | upstream | 44994 | 54762484 ~ 54777445 (-) |
| celf4 | LOC106565371 | coding | upstream | 148601 | 54866028 ~ 54973879 (-) |
| LOC110493219 | LOC106565506 | coding | upstream | 904424 | 55621914 ~ 55625468 (-) |
| G1464948 | NA | non-coding | downstream | 1454 | 54714409 ~ 54714650 (-) |
| G1464947 | NA | non-coding | downstream | 2081 | 54713776 ~ 54714023 (-) |
| G1464945 | NA | non-coding | downstream | 9281 | 54706286 ~ 54706823 (-) |
| G1464896 | LOC106565361 | non-coding | downstream | 52228 | 54658294 ~ 54663876 (-) |
| G1464925 | NA | non-coding | downstream | 65604 | 54650270 ~ 54650500 (-) |
| G1465001 | NA | non-coding | upstream | 86038 | 54803528 ~ 54819314 (-) |
| G1465119 | NA | non-coding | upstream | 271573 | 54989063 ~ 54989335 (-) |
| G1465163 | NA | non-coding | upstream | 299504 | 55016994 ~ 55017366 (-) |
| G1465187 | NA | non-coding | upstream | 314824 | 55032314 ~ 55032744 (-) |
| G1464933 | NA | other | downstream | 42185 | 54672252 ~ 54673919 (-) |
| G1464551 | NA | other | downstream | 252402 | 54462671 ~ 54463702 (-) |
| G1463760 | NA | other | downstream | 935608 | 53778482 ~ 53780496 (-) |
| G1462356 | NA | other | downstream | 2011416 | 52704133 ~ 52704688 (-) |
| G1461521 | NA | other | downstream | 2955082 | 51746916 ~ 51761022 (-) |
| G1464954 | NA | other | upstream | 9306 | 54726796 ~ 54727895 (-) |
| LOC110494137 | LOC106565384 | other | upstream | 1236983 | 55954473 ~ 55971001 (-) |
| dnai1.2 | dnai1 | other | upstream | 1445370 | 56130667 ~ 56167366 (-) |
| elmo2 | LOC106565399 | other | upstream | 1777366 | 56494856 ~ 56530610 (-) |
| hig1a | hig1a | other | upstream | 2512017 | 57229440 ~ 57233433 (-) |
