G1466021


Basic Information

Item Value
gene id G1466021
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 55825540 ~ 55827889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1676833
TGCTTGTTTATTTTTATTAGAGAAAATATGAAGCAAGCACAAAATGCTTTAAAACAATCAACTGTGTATACAGTATAGGATAATCACCCATCTAGTAAAGAGCACCCTTGTAAAATAAAGGGCCCTGTAGTTGCAGTGTCACAAAAATAGAATGCAAAGATGCATTTTCACATGTCATTTGTGACTTGTACAATCGAGAAAACAAACATAAGAGTCCCTGACGGTAATAATTTAATTTAATGGATGTTTGAAAAATGAACTAAGCTGAGCAGAATATGGTGATAAGACTAAAATGTATATGTATCTTAGAATCCTAAGATGAAAGGTATTAAATATATTGCCAGAGTTGATATTAGGTGATGCAAGATACACTGTTAACTTGAGGCAGAATCCCAACACAAATGACATGAATAACTAACTCCCTCTCACCTAAATCATGCTGTTTGTCGCCGATTTGGACAGAAGTTTGTGTACATTTTAACTTGGGGATTCTGCCTTAAATGCTCATTGCCTCTTTAGAGACGTAAAAATGCAGGTTTGATGAGAGGGGGGAAAAGTTTCTCCTTAGTGGTAGCTGTATGGTTGTACAGCAAGAAAACAATCAGTTCTTCCTTATTTTATATTCACAATGGCTTCTACTACATTATCACGCCACAGACTTGCAAATAATATTCTCCGTGGATGTAAGACTATTCCGCTACTTTCCCCACCCCCACTTCAAAGGCACGTGCACTGGTGGCCCATGTGTCTGTCATCCatgtctatttatttatttattgaataaatAGTTTTGACAGTAACCCTCCAACAAGTCTAATGCTTCTTAGGTAGTTCTATGAGTTTTAGTTTAGAAAACAATCTCCGCAGAAGCGACAGTTACAGGGATGGTAAAAAGAGATCTTGATTGTCGTAGTGACATCAGGGGAAACTGGGCAGAAGAAAGTTGTTACAGAACTGCTGTATTTGAAGCACATCTTTAATTGAGCCTCTCATTCTCCTTAATTGCCGACCTCAACACTTTAAGGAAAGAGACTAACTGTATAGGAAGCTCTGggatagtgctgagcgattagtgttTTTGGAGGTCTGTTCGGTTTCGGTtagattatttaaaaaataatcacagttttgctaatttttttaaaacattcAATGCAATATGcattgtgggttgaatgctgttacacagaataaaacaattaataaaagtcccatgatggtagactgcccattactgcttatcaattactaaccatcatttattcacattactttaataaaatatttcagttgtggtgtatattacatttattttttatttttatgaatatattatttaattccaagtcatctcTAAAGAGCTGCTGCCTAATGCTGTCTGAAAAGAAATCACTATTTTGCAGTTCTTCAAATTAAATGAGGCACACTTTTATGAcggctgaataccaactatcaaccACTTAGATCATGTGTTTACCTCACGGAACAACAGCTGCTCTCTATATCCCTTAATGATCGCGCATTCTTCTCTCTTGTGTAGCAGTCATAACAGAAACACAGAACGGATCTGATTTATCTTTAGAGAAACTGTGTGCAGTGAGCTTACAGGAAAAATAACGGAActaaatgaaatacaaataatTGATTCAACGTcagttgttgttgtttaaaaacccgaaaaataacacatttcagttaatcgctcagcactactctggggacaggggggggggtccagagaAACAGCGTTACGCTGGTGTTCATAGGTGCATAGTTAATTGCCTGCTCAACACACTGTCctaaaaacaattaaataaacAATTCAGGACACTGTCTCAAAGTGCAGCAGGTGTCTCAAAACATCACTTTCTTTCCTTACGGTGGACCACAAAGATTGGGTACAGGTAACTAAATAGCTCTGATTTGATAGCACCAGCACTCTGCTGTACATGTGACAGAAATTTGTGAGAACAGTAAAGACAGAGTTGCTTCTTCAAGCTGGATCTTTAAAACAGGGTTTTTTCGTCTGCAACGTCCTTATATAAAACGTTGGCACTGAGGTGAGCTTTGCTTTTCAATTTTCATCCAGCACCGTTAGGGAGGAAACAGACGGCACAGCGCTCCCTCTAGCGGTTGGTCATTTCACAACAGTCTTGCCGGTCATTCATCAGTTTCGCAAAATAAAATGTTCCTCCTGGTCTTTCCATTGAGTCCGTCCACACTACCTGTGTCCCAGCTGGTTATTCATGAGGCCACTGAAAGAGGATTCCTCTGACTCGGAGCTCACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1676833 True 2290 lncRNA 0.38 3 55825540 55827889

Neighbor

gene id symbol gene type direction distance location
LOC110494141 LOC106565378 coding upstream 7214 55811948 ~ 55819195 (+)
LOC118940664 NA coding upstream 35929 55789483 ~ 55789611 (+)
LOC118940663 NA coding upstream 36502 55788910 ~ 55789038 (+)
LOC118940659 NA coding upstream 37224 55788168 ~ 55788316 (+)
LOC118940662 NA coding upstream 38234 55787178 ~ 55787306 (+)
LOC110493222 NA coding downstream 105683 55933572 ~ 55946587 (+)
LOC110494134 LOC106565385 coding downstream 202234 56030123 ~ 56039321 (+)
LOC110494131 LOC106565386 coding downstream 228402 56056291 ~ 56081057 (+)
LOC110494143 LOC106565389 coding downstream 260260 56088149 ~ 56127481 (+)
LOC110494144 LOC106565388 coding downstream 280493 56108382 ~ 56112085 (+)
G1465932 NA non-coding upstream 219151 55606145 ~ 55606389 (+)
G1465866 NA non-coding upstream 275286 55549921 ~ 55550254 (+)
G1465833 NA non-coding upstream 303400 55521903 ~ 55522140 (+)
G1465770 NA non-coding upstream 347955 55477292 ~ 55477585 (+)
G1466081 NA non-coding downstream 103320 55931209 ~ 55932588 (+)
G1466095 NA non-coding downstream 123683 55951572 ~ 55952010 (+)
G1466096 NA non-coding downstream 124170 55952059 ~ 55952379 (+)
G1466097 NA non-coding downstream 124524 55952413 ~ 55952619 (+)
G1466098 NA non-coding downstream 125015 55952904 ~ 55953120 (+)
LOC110494110 LOC106565356 other upstream 1351068 54471705 ~ 54474472 (+)
LOC110494100 LOC106565348 other upstream 1560924 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 1635923 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 4734651 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 4928096 50894903 ~ 50897444 (+)
G1466124 NA other downstream 168759 55996648 ~ 55998347 (+)
G1466131 NA other downstream 187688 56015577 ~ 56016613 (+)
G1466224 gem other downstream 391353 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 752502 56575737 ~ 56584088 (+)

Expression


Co-expression Network