G1466100 (LOC106565384)


Basic Information

Item Value
gene id G1466100
gene name LOC106565384
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 55957214 ~ 55971232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1676914
GATCCTGGCCACCCTCCAGAGCCTGAGGAGGATCAGGAGGCCCATGCCGTCAAAGGCATCTTCACTGGCGATATACACAATGTCCAGGATGAAGGACACAATCACCACCAGCCCATCAAACATCTCAAACTTGTGATGGAAAAACTCCAGCCTGTAGGCAAAGAGCTTTCCAGCCAGCTCCACCATGAAGAAGGTGAGAAGAGCCAGACTCAGGTAGTGGAAGACCTGAGGGGCAACGTGCCCATGCTCCAACTTGATGATTGACAGGTCGATCAGTAGCTCGCCCAGCACAAAGAATGCATCCAGGATGACCAGGCATACCACAGCTATCTGGAATCTGTCTGAGCTGTAGAGTCTCTTCAGGGAGTCTCTGAAGGTGACTTGTAAGTGGGGCAGCTGTCCTGTGgctggtcctgtctcctctctagccTCATGCAGCCCCTCGTTGTGCCAATGGGCTGTGTGGTCATCACCCACCGTGGTGAAATGCCTCAGGTACTTGGACATGGTGCTGCAGGGGGGTGGGGTGGCCCACCACAAATAGACTGTGGTTTTCCTAGTTATACGTTAACTGAATGTTAAATGCCAAAGCTATCAAATGTCACAAGTTTGTCTGAAGTACAATAACTCAATAGCCCTAGTGTTTATCTAAGGTTTTCATTTCCTAACATTGACATTGTTAGTTTAACCAATTTACTAGCATTAACAAGGTTCATATCATCCCCAGCATGTTGATTAAGCGTTGGGATACATATTGTAACCCTCAAATTTTCATATACACAAAGAATAGACAGCCTATTGCAATTTATGACTGACTGCTCTAACAGTAATTCATTGTACTGTACAATACGAGTATACTTCTACTTTTAAACATTACAAAAGCATGCAAGATGTCAACAAACCAAACCATTTGACTCAAGATGCAAGTGAACTGTGTGGCCAACCTATGTTGAATTTCCTAAGAAAATCTAGACCAATAGATTTTATC
>TU1676915
GATCCTGGCCACCCTCCAGAGCCTGAGGAGGATCAGGAGGCCCATGCCGTCAAAGGCATCTTCACTGGCGATATACACAATGTCCAGGATGAAGGACACAATCACCACCAGCCCATCAAACATCTCAAACTTGTGATGGAAAAACTCCAGCCTGTAGGCAAAGAGCTTTCCAGCCAGCTCCACCATGAAGAAGGTGAGAAGAGCCAGACTCAGGTAGTGGAAGACCTGAGGGGCAACGTGCCCATGCTCCAACTTGATGATTGACAGGTCGATCAGTAGCTCGCCCAGCACAAAGAATGCATCCAGGATGACCAGGCATACCACAGCTATCTGGAATCTGTCTGAGCTGTAGAGTCTCTTCAGGGAGTCTCTGAAGGTGACTTGTAAGTGGGGCAGCTGTCCTGTGgctggtcctgtctcctctctagccTCATGCAGCCCCTCGTTGTGCCAATGGGCTGTGTGGTCATCACCCACCGTGGTGAAATGCCTCAGGTACTTGGACATGGTGCTGCAGGGGGGTGGGGTGGCCCACCACAAATAGACTGTGGTTTTCCTTAATGTAGACCTAGTGCTTTAATAGTTTATAGTCCCGTTGAAAAGTTGTTGATGTCCTCCGTTTTTCCCATAAAACCTTTGTCCTCAACTCCGCCTCTGTCTCAGAACCAGCACATTCCAAGAGGAACGGCGCCCGTGTAGACGAAAGTTGACTGCATAAAATTTGGAACCGCACCGCCTCCCAGACGTGAGCCTATTATTCAAAGGCTATATCgactcaaaacaaaagtgatgtAGCCTAATTTACGCACGTGTATTAATGAGTAGGATTATGTGTTTTTCTTGCAAAGGTGATTGCTTTTGATAAACGCTgtatctgccttcccaatgaaaacaAGTTTGAAaatgcaaaaatgtattttatggaAAATAGATGTATGTTTCTGAATGatcaccatgctgccttgttgacaaaatGACGGAGCAGCTCCCAATGACTTGATGGGCCATTGTCCAGTGGCATCACTAGGGCTGGGCTTCGAGGGCTTCAGCCCCAAATGTTTTTTGATCGAGCGGGAACCTTTTGATGTTCCATAACCACACGTCACCAGTGGCAACCCGTCATCGGTGCGgcagggtaggctagtggttagagcattggactttttacaagttcaaatccctgagatgacaaggtacaaatctgtcgttctgcccctgaacagacagttaaccc

Function

NR:

description
voltage-gated hydrogen channel 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1676914 False 988 lncRNA 0.45 3 55957214 55959419
TU1676915 True 1234 lncRNA 0.49 4 55957214 55971232

Neighbor

gene id symbol gene type direction distance location
LOC110493222 NA coding upstream 10627 55933572 ~ 55946587 (+)
LOC118940477 NA coding upstream 128345 55824599 ~ 55828869 (+)
LOC110494141 LOC106565378 coding upstream 138888 55811948 ~ 55819195 (+)
LOC118940664 NA coding upstream 167603 55789483 ~ 55789611 (+)
LOC118940663 NA coding upstream 168176 55788910 ~ 55789038 (+)
LOC110494134 LOC106565385 coding downstream 58891 56030123 ~ 56039321 (+)
LOC110494131 LOC106565386 coding downstream 85059 56056291 ~ 56081057 (+)
LOC110494143 LOC106565389 coding downstream 116917 56088149 ~ 56127481 (+)
LOC110494144 LOC106565388 coding downstream 137150 56108382 ~ 56112085 (+)
LOC110494146 fam219a coding downstream 199377 56170609 ~ 56192396 (+)
G1466094 NA non-coding upstream 474 55954513 ~ 55956740 (+)
G1466099 NA non-coding upstream 3564 55953307 ~ 55953650 (+)
G1466098 NA non-coding upstream 4094 55952904 ~ 55953120 (+)
G1466097 NA non-coding upstream 4595 55952413 ~ 55952619 (+)
G1466096 NA non-coding upstream 4835 55952059 ~ 55952379 (+)
G1466114 NA non-coding downstream 7790 55979022 ~ 55979259 (+)
G1466116 NA non-coding downstream 10262 55981494 ~ 55981931 (+)
G1466120 NA non-coding downstream 17219 55988451 ~ 55991227 (+)
G1466121 LOC106565491 non-coding downstream 21185 55992417 ~ 55994174 (+)
G1466124 NA non-coding downstream 25628 55996648 ~ 55998347 (+)
LOC110494110 LOC106565356 other upstream 1482742 54471705 ~ 54474472 (+)
LOC110494100 LOC106565348 other upstream 1692598 54256327 ~ 54264616 (+)
G1464092 LOC106565344 other upstream 1767597 54147039 ~ 54189617 (+)
G1460249 LOC106565103 other upstream 4866325 51080132 ~ 51137770 (+)
LOC110494047 btg2 other upstream 5059770 50894903 ~ 50897444 (+)
G1466131 NA other downstream 44345 56015577 ~ 56016613 (+)
G1466224 gem other downstream 248010 56219242 ~ 56220946 (+)
LOC110494160 LOC105017078 other downstream 609159 56575737 ~ 56584088 (+)

Expression


Co-expression Network