G1466702 (tbc1d20)


Basic Information

Item Value
gene id G1466702
gene name tbc1d20
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 56480987 ~ 56483412 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1677596
CTGGTTATAGTCCTTATTATTCTCCCGCTCTACTTCctCTGATTTCTCAGGCAGGATGTCGGTGGGCACGTTGAGCAGCCGTGGCCACACTTTACAGCGGATCTCATCAGTGAGCAGCCCCCCCTCGCTGATGGCCATCCTCCTCAGCACTGCCACATCAACTGGCGTCACGTTCAGGGCCTGAGAGATCTCCGCTAACTTCCTCTTCCTCCGGGGGTCCCCATCTGTCCACATGACAATGGTTCAGGTGAGGTCTCAACTCACAGCAGTTACAGTAGCACAGTGGCCATTAGCCAGAACATCCTCCTGAGATAGCTAAACTCGGAAGCGGACAGGCAAAGTATC

Function

symbol description
tbc1d20 Predicted to enable GTPase activator activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Warburg micro syndrome 4. Orthologous to human TBC1D20 (TBC1 domain family member 20).

NR:

description
TBC1 domain family member 20-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1677596 True 345 lncRNA 0.54 2 56480987 56483412

Neighbor

gene id symbol gene type direction distance location
rbck1 ub7i3 coding upstream 7212 56461343 ~ 56473775 (+)
LOC110494152 LOC106565396 coding upstream 28610 56447092 ~ 56452377 (+)
LOC110494151 LOC106565395 coding upstream 106262 56368032 ~ 56374726 (+)
LOC110494150 NA coding upstream 151945 56324591 ~ 56329073 (+)
zgc:109965 LOC106565507 coding upstream 278135 56192761 ~ 56202852 (+)
LOC110494158 LOC104945853 coding downstream 70093 56553505 ~ 56556106 (+)
LOC110494160 LOC105017078 coding downstream 92325 56575737 ~ 56584088 (+)
LOC110494159 nrn1 coding downstream 101447 56584859 ~ 56591591 (+)
LOC110494162 LOC106565402 coding downstream 114993 56598405 ~ 56617378 (+)
LOC110494163 inpp coding downstream 139128 56622540 ~ 56629007 (+)
G1466632 NA non-coding upstream 137764 56343020 ~ 56343223 (+)
G1466631 NA non-coding upstream 138445 56342327 ~ 56342542 (+)
G1466630 NA non-coding upstream 138862 56341261 ~ 56342125 (+)
G1466708 NA non-coding downstream 11442 56494854 ~ 56506137 (+)
G1466707 NA non-coding downstream 50256 56533668 ~ 56536745 (+)
G1466742 NA non-coding downstream 76101 56559513 ~ 56559838 (+)
G1466775 NA non-coding downstream 161102 56644514 ~ 56644724 (+)
G1466787 NA non-coding downstream 185138 56668550 ~ 56671026 (+)
G1466224 gem other upstream 260041 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 353506 56088149 ~ 56127481 (+)
G1466131 NA other upstream 464374 56015577 ~ 56016613 (+)
G1466124 NA other upstream 482813 55996648 ~ 55998347 (+)
LOC110494110 LOC106565356 other upstream 2006515 54471705 ~ 54474472 (+)
G1467020 NA other downstream 634290 57117702 ~ 57118886 (+)
G1467030 NA other downstream 663101 57146488 ~ 57147741 (+)
G1467031 NA other downstream 665891 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 995385 57478797 ~ 57554480 (+)

Expression


Co-expression Network