G1467001 (LOC106565426)


Basic Information

Item Value
gene id G1467001
gene name LOC106565426
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57113017 ~ 57116744 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1677955
ACATTTAAGTCAATGATTCAACTTGTACATTCAAACATAGAAATGTAAATAAACTCTGTCAGCACTGAAATCACACGAGTCAGTGCCTTGATACAATCCTTGAGTTTATCATGAACAAAAGACATGGCATCAGAATTGATGAAGGCTACCCCTGCAAACATTGACAGCAATTTGTTTGCTTACTGGCATTGATCTTTGGCTAATTGTGCACATCTGCAGTCATACTTGTTCAAGGCAAAGCACATAATGTCTTGttgccacaaaaaaaaaaactgaatgtATTCCCTTTCCCTGATTTTACAGTGTTAAAATGTCAATGTAGCCTGAGATTGTCGTAGATATGCATAGAATAGACAGCATTGTGTTTAAAATAAACTGGTTGGCTCCACTGCCGGTTGTCTACATGTAGGTCTTGGGAACGATGGGATCTCCATACATGCAGTCTTCCTCCAGGGCCAGGTTGTACTGACTGCCACTTCCTCCCTTGTAGGCACTGGTCACGATCCTCAACCAGCCCTTCTCTCCCCAGGGCTCTCCCCAGGAGTTGCGGACGATCCAGAACTCCACACCATTCTCATCCAGGCCCCAGCCGGCAACAGACACAATGTGGTTGATGTAGGGCTCCTGTATATACTCAGAGTACAGGCCTCCTGTGTAGGCGTCCAACTTATCTGTTGCCATGATCCCACAGCTGATCGGTCCACCAGCGTAGATCTCAGCCATCATCTTCTCCCTCCCACTGACAGGGCCGAAGTCTGCGACCTTCCACAGGGTGTAGTTCTGGATGACGTTGCAGACCCCGAATGTGGTGCAGGTTCCACACTGGTTGAACAGTTTGCACGTCTGATCAATGGCCTGGTAGTTGTTGCAGGTCTCGTCAGGGATGCCATGTTTGTTGGCATACTCCCACACCCCAGTGTGATCACCTCCATGACAGGAGCCAGCCTCACCACAGTCCACCACATTCTGGACTGACAGGTAGGCAGAGGGCCAGGCTCCCTTCCGCTTGATGTTTATGCGATctgccatggCGCTGGTGCTTCCGTGTGCCCAGCAGGAGCCACAGTACTGGGGGATGTGCTGATTGCGGGTAGTGCTGACGTAGTTGGTGCCGTTGATGTTCCTCCAGTCCCAGGCCTTGGGGAGCTCATTGAGTTCAAGGAACTCGTAGGGTCGGGGCATTGTCCTGAATCCATTGTGCTTGTTCAGCTTGGGTCTATAGCATGGCTGCTTCTCGTTAAAATAGCGTCCAGCAAAGACACCCGACACCATAAACACGAATAACAACAGTGACCGAGCCATGTTGAAAAATATTTGTCATGTGACTT

Function

NR:

description
cathepsin Z-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1677955 True 1328 lncRNA 0.49 6 57113017 57116744

Neighbor

gene id symbol gene type direction distance location
nelfcd nelfd coding upstream 1455 57105818 ~ 57111562 (+)
LOC110494185 LOC106565423 coding upstream 7839 57073921 ~ 57105178 (+)
rabif LOC106565422 coding upstream 45955 57065044 ~ 57067062 (+)
adipor1a LOC101268928 coding upstream 52566 57051596 ~ 57060451 (+)
LOC110494182 LOC106565421 coding upstream 62029 57042425 ~ 57050988 (+)
nramp-alpha nramp-alpha coding downstream 59707 57176451 ~ 57225686 (+)
LOC110494189 LOC106565429 coding downstream 121516 57238260 ~ 57274001 (+)
LOC110494190 LOC106565431 coding downstream 158533 57275277 ~ 57304551 (+)
tegt LOC100196653 coding downstream 189060 57305804 ~ 57329727 (+)
LOC110493228 LOC106583273 coding downstream 352009 57468753 ~ 57474567 (+)
G1467009 NA non-coding upstream 42741 57069563 ~ 57070276 (+)
G1467007 NA non-coding upstream 44756 57067853 ~ 57068261 (+)
G1466999 NA non-coding upstream 48120 57064549 ~ 57064897 (+)
G1466998 NA non-coding upstream 48835 57063981 ~ 57064182 (+)
G1466997 NA non-coding upstream 49862 57062917 ~ 57063155 (+)
G1467030 NA non-coding downstream 29744 57146488 ~ 57147741 (+)
G1467041 NA non-coding downstream 56805 57173549 ~ 57173965 (+)
G1467054 NA non-coding downstream 77730 57194474 ~ 57212587 (+)
G1467113 NA non-coding downstream 222697 57339441 ~ 57340388 (+)
G1467121 NA non-coding downstream 231720 57348464 ~ 57349023 (+)
LOC110494160 LOC105017078 other upstream 530296 56575737 ~ 56584088 (+)
G1466224 gem other upstream 892071 56219242 ~ 56220946 (+)
LOC110494143 LOC106565389 other upstream 985536 56088149 ~ 56127481 (+)
G1466131 NA other upstream 1096404 56015577 ~ 56016613 (+)
G1466124 NA other upstream 1114843 55996648 ~ 55998347 (+)
G1467020 NA other downstream 958 57117702 ~ 57118886 (+)
G1467031 NA other downstream 32559 57149303 ~ 57150343 (+)
G1467159 LOC106565433 other downstream 362053 57478797 ~ 57554480 (+)
LOC110494206 LOC108254821 other downstream 381638 57498305 ~ 57548178 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019288 NA coding CM030124.1 CM030124.1 12442688 ~ 12445186 (-)