G1467159 (LOC106565433)


Basic Information

Item Value
gene id G1467159
gene name LOC106565433
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 57478797 ~ 57554480 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1678130
CTCAGGAACATGTTTTCcccattttttttgttgccattttAGAACATATGATGCAGCAAACCCTGTTTGGAAGTGCAAATCACAAAACTAGTGCAAATTTACATTAGCAGAGGCAtgctgaaataacacacactttGTGCCAAGACTCTGCTGAAAAACAACTTTTATATCAAACAGTTGCTTTCAGAAAAAAATACCTAAATGTTCAAGATAAATTGTGACATCAAGGAGCATTggataagacacataaccattcaCCAACATAACAGGTAGTATTGCACATTTAGAAACCTCCCGAGTAAAGTACAtattgtgccttcagaaagtattcatacccctcaaattttttccacattgttgtgttacagcctgaatttaaaatggattcaattgagattgtgtcacagatctacacacaataccccataacgtcaaTTTGTAATGatgttttaatacatttataCAAATGAtttgaaaatgaaaagctgaaatgtcgagccaataagtattcaaccctttcgttattgcaagcctaaataggttcaggagtaataatgtgcttaacaagtcagataataagttgcatggacttgcAATAGTGTTCAACATGATTTTTAAAATGACTACCCAATCTCCGAGAGctactttaaccatatctacatgtacattctacatcaattagcctgtatgtagcctcgctactgtatatagtctgtctttttactgttgttttatttcttaacctacctattgttcacctaataccttttttgcactattgttagagcctgtaagtaagcatttcaatgtaaggtctactacacctgttgtatttggcgcatgtgacaaataaaatttcatTTGATTGAAGCCACATACCAGTCTATCAACCAAGCTCCCCCTTAAAACCCTGGCTCTCCAGATACTGACCATTCTCAATGTAAGATACTGCTTTTCTAGTACTGCCAGAGAAACTCCTTCCCAGAAGACCTTCATTCGCTGGAAAGTGATAAAGCAGTCCCCTTGAAAAGCTGCCTGCAAATCCTCTCTCCTGAATTAGACAAGTCCACAGGTCTCATTTGAGTTGGGGGCCGGGTTCGAAGATCCGAGACTCTCAAACCAGAACTGTGAATTGGTGCTAGATTCGAAGAACCCAATCACACGGCTCCAGTCTCAAACACTATGATGACAAGCTTCTCCATCCTCGTGCTGACATCCACAGTCATTTCTGGTTTTGAAGGGACGTCAAAGCTGTGAGTCTGAACAACATTCAAATGCAGAGAATGGAAAGCCAAACCATGTGCCTATAAAGTGTCTGACCTACACTATATACCCCTTCagattagtggattcagctacttcagccacacccgttgctgacaggtgtataaaatcgagcacacagccatgtaatctctgtagacaaacattggcagtagaatggccttactgaagagctcagtgactttcaacgtggcactgtca
>TU1678132
CTCAGGAACATGTTTTCcccattttttttgttgccattttAGAACATATGATGCAGCAAACCCTGTTTGGAAGTGCAAATCACAAAACTAGTGCAAATTTACATTAGCAGAGGCAtgctgaaataacacacactttGTGCCAAGACTCTGCTGAAAAACAACTTTTATATCAAACAGTTGCTTTCAGAAAAAAATACCTAAATGTTCAAGATAAATTGTGACATCAAGGAGCATTggataagacacataaccattcaCCAACATAACAGGTAGTATTGCACATTTAGAAACCTCCCGAGTAAAGTACAtattgtgccttcagaaagtattcatacccctcaaattttttccacattgttgtgttacagcctgaatttaaaatggattcaattgagattgtgtcacagatctacacacaataccccataacgtcaaTTTGTAATGatgttttaatacatttataCAAATGAtttgaaaatgaaaagctgaaatgtcgagccaataagtattcaaccctttcgttattgcaagcctaaataggttcaggagtaataatgtgcttaacaagtcagataataagttgcatggacttgcAATAGTGTTCAACATGATTTTTAAAATGACTACCCAATCTCCGAGAGctactttaaccatatctacatgtacattctacatcaattagcctgtatgtagcctcgctactgtatatagtctgtctttttactgttgttttatttcttaacctacctattgttcacctaataccttttttgcactattgttagagcctgtaagtaagcatttcaatgtaaggtactttgatttgatttctgtaccccacacatacagataattgtaaggttgCTCAGTCAAGCAATTAATTTGaagcagattcaaccacaaagaccagggaggttttccaatggttcgcaaagggcacctattggtagatgggtaaaaaagcagacattgatcatggtgcagttattacactttggatggtgtagcaatacacccagtcactacaagtACAGTCGCCCTTCTTTAAGGAAAGTAAGGaacctgctcagggatttcaccatgaggccaatggtgattttaaaacagtgacagagtttaatggctgtgaatagagataactgaggatggatcaacaacattgtagttactccacaatactaacataaatgacaaagtggaaagaaggtagcctgtacagaataaactaggaatagagctaagcacaggcaaaatcctccaggaaaacttggttcagtctgctttccaacagacactgggaggcaaattcacctttcagcaggacaattacctaaaacacaaggccaaatatacatggGAATTGCTTACCaaaacaacattgaatgttcctgagtggctttgttacagttttgacttaaatcgtcttgaaagtctatggcaagacttgaaaatggcaaGACTCAAATGGCTGTAcagcaatgatcaataaccaaccattttttaaaaagaataatgtgcaaatattgtacaatccaggtgtgcaaatctcttagaggcttacccagaaactcacagctgtaattgctgccaaaaggtgattctaacatgtattgactcagggggttgaatacttatgcaaattagatattttagtgttttattttccagtaatacaatgttatttgattttttttcccACTTCGACAGAGTATTTTGTATAGATCGTTAACataaatgacaattaaatccattccactttgtaacaacatgtggaaatgGTCAAGGtgtgggaatactttctgaagactaTCTCCCGCAGAAACAGAAATTCAGGCAATAGAAACAGAATAGAAATCACATCACAAGTATCAGTTAGGAATTATTTCAGTGTGCTTTCGAACTTGACATCCATTTAACCCCTATTACCAAGAGCTGCATTCTGACTTGAGATACAAAGTCTAACACACAAAACCTAGTGTTGAAGGCATTGTAAGATTTGCCCCCAAGTTCATTACAAACGCAGTATCTGTTGAAAATGTTCAACAATGTAAGGATTGGAAAACAGATCAATTCCATTTGACCTCGCTAGTGTCAAACATGGACAGGAATGTTGATAAAGTAtgcgtcccaaattacaccctattccctttatattgccctggtcaaaagtaatgcactaaaaagggaataaggtgcctttGGGACTATGCAAAAATCTCCTAAAAAGATTAATAGGTAGCAATGTTTATGTAACTCTTTCCAAGTCAAAAGATTATCCTCAGATTTTATGTTAATGGTTATGGGTAGAGAGAAGAAAAACAAAGGGTACATTGTCCAGCAATGCCAGATACAAAATAACATGTAAGGTCTACCAATTCAGTAGTTTCACTGCGACTGTGCAAACATGACCTGACAAGTAGCATGCAGTACTGTTACTGTACATATACATTATCAGGTATCCTTAAAGTTTTACTGTTAAATGGAATGTCGTTACTTTTTCAATCATGCTAGTATCGTACTAAAGCTAGATTACATTCAGTAAATGTATCACATCTTTCAAGTTAATCTTCCATATTCATAAAATGCATTAAGGTGAGCCAGGAAAGGCACCAAATCCTTCTTGAAGATCAAATTTAAATGTCCCTGTGAAGGCCAGTGAGGCAGTGAAAACATTATGGTTTTATACCCATAAATGGAATTATTCAAATATATAGTAGCTAGCTCCTTGGCTGCCTGCTATTGTGATTACAATCTTGCCAGCGTCTAAACTTAAGTGCATAAAAACAACTATAATCGTCTTCATCTACGAATCACATAGTTTGCCTGTTTAGAATGCAAAAGGTCTGACATATCTGATAGTTCAGTGTACGCAAACAGTCTTGTGTGATTATCAGTCACTAAGAAAAAGAGAGGTCATTTGCCTTTTGTGCCGAACAGCAGGGGGGGGAGGGGAAACACACAAAGAACACGTAAGTGCAACCTTGCAAGTCGTGCCAAACAtgcggagggagagagattggctGTAGACATGACTGGAATTCCACGCTGCCTGGTAGCATTAAGACAACTCCCAAGATTGACTCTACCCTTCTATATGTGTAAATGGAGAGTACAGGTCCAAGAACAATAAGACGTAATAAAAAAATGGATGCACGTAAGTCTCTtcggataaaagcgtctgctaaatggcatatattatcaAGAGGCGGACGGAGCGAGAGCAGTGATCTCAGAGAAGATTTGATCCTTCGTAGCACAACAGTTCTGCAGCTCTTACGACAGAATGCAAGATTCATTGGGGTTTTTGAGGCTCTTGGGTTCGTTGCCATTCGACAGGTCTCCCTCATCATCTACTGGGGAGCCTTCATCATGGGGCAGCCTTGGCCCGTCACCCTCTTCCAGCTCGGGCATGTCAGCGCAGGCATCTTCATAGGCGCTGATGCTGTCTGTGTCATTGTTCCTGTCGGGGGAGAGGTCACGCCCGTTCTCCTCCTGATTGCTCCCGGGGGTCTGGCTACCGAGTGACAACGGCCCAAAGGTCTTGTTGACTATCTTTGTGAACTTGGTGAAGCTGTCCTGTGCCCCATCTGCTACGTCCTCAGAGGACACCAGCCGGGCAACGTGGAGAGGAGAGGCCCGGGTCATACTGTCAGAAGGCtgctcccccctcccctttttgAAGAAGGAAGCGAGCAGCCCCCCAGTGCTGGTCTCAGATGATAGCCCGTTGTTGGGCCCGGGGCCCTCACTGTCCAATCGGATAATAGATAGAGGTGCATCTTGGCGAGAATTGTCCTCATCCCTTGGTGCATCCCTGATTTGTTCCTGTGCTCCCTTTTTGATTTTCATCTCTGGGGCTTGTTGTCTAGCCATCTCATCTTCCCTCTCCTGCTCCTTGACAAGTGTGTACACTGGGACCGCTGATATGGTGTTCCTCTCCTGTGGAACAGTATGATACAACAGCTATATTAATAATGTTCACATCagggttatgtcccaaatggcaccctattccatatatggcGTACTACCTTTGACctggatctggtcaaaagtagtgcaatatatagggaatagggtgccatttgggacactcaACTGTACAGACCTAAGTACAGCAGGGAAACAGGAAGAACATTTACATTTTGATTTTCATACTGTACAACCAGATATAAAATGTCAAGGCTAGAGGTGGGTGATATGAAAACCAGATTCAACAAGTACAGTCATATAATGCTGCTACTATTACAAATATGAGTCCAAATCTCTGTCAAATTAATTGTATAGCCTCGTCTCTGGTACATCTTGTGCTACACTGTATCAATATATTCATAGCTTGATTTTCATGGCTTGAGGCATTGGCTGGGAAATTAGCCAGGCCAATTGTCACGTTACCGTTTCCTGATTGCAATAGGAAACAGGCAGCATCTGTATGTCTGTCAGTAATTGGACAGGGCATCCTACTGCAGAGCAGAGCAAGCACTGGGTACAAGGCCAAGGCCATTTGACGGGTCACACTGGACTTACCCAACCACAAGCCCATGCTGATGATCAGATGACCAAATTATTACAACAAATGTCTCAGTCAatgcaaaaatgtttttgtttgaaaATCTGAGGTTTCTTAAAGTGAGGAGGATATAGAATATAGAGGCAGCTAGGATATATTCTTGAGCTCTTCTTAGGGCTTTAAATTGCAAACAGGCAACTCCCTTCTAATCTGCCCCAAGCCTCAGTAGCAGATAAATGGACTGTGATAAGG

Function

NR:

description
leucine-rich repeat flightless-interacting protein 1-like isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1678130 False 1485 lncRNA 0.39 2 57478797 57554480
TU1678132 True 4762 TUCP 0.40 2 57478797 57483589

Neighbor

gene id symbol gene type direction distance location
LOC110493228 LOC106583273 coding upstream 4230 57468753 ~ 57474567 (+)
tegt LOC100196653 coding upstream 149070 57305804 ~ 57329727 (+)
LOC110494190 LOC106565431 coding upstream 174246 57275277 ~ 57304551 (+)
LOC110494189 LOC106565429 coding upstream 204796 57238260 ~ 57274001 (+)
nramp-alpha nramp-alpha coding upstream 253111 57176451 ~ 57225686 (+)
LOC110494197 LOC106565496 coding downstream 101469 57655949 ~ 57665568 (+)
LOC110494203 LOC106565438 coding downstream 129365 57683845 ~ 57688188 (+)
LOC110494205 LOC106565438 coding downstream 139696 57694176 ~ 57697563 (+)
LOC110494199 LOC106565440 coding downstream 150940 57705420 ~ 57712033 (+)
LOC110494196 timeless coding downstream 169191 57723671 ~ 57757730 (+)
G1467206 NA non-coding upstream 5475 57473088 ~ 57473322 (+)
G1467200 NA non-coding upstream 14213 57464300 ~ 57464584 (+)
G1467198 NA non-coding upstream 15614 57462979 ~ 57463183 (+)
G1467180 NA non-coding upstream 37133 57441450 ~ 57441664 (+)
G1467307 NA non-coding downstream 86087 57640567 ~ 57640839 (+)
G1467308 NA non-coding downstream 86769 57641249 ~ 57641480 (+)
G1467315 NA non-coding downstream 94733 57649213 ~ 57649433 (+)
G1467338 NA non-coding downstream 139170 57693650 ~ 57693953 (+)
G1468149 NA non-coding downstream 150323 57704803 ~ 57705010 (+)
G1467031 NA other upstream 328454 57149303 ~ 57150343 (+)
G1467030 NA other upstream 331056 57146488 ~ 57147741 (+)
G1467020 NA other upstream 359911 57117702 ~ 57118886 (+)
LOC110494160 LOC105017078 other upstream 896076 56575737 ~ 56584088 (+)
G1466224 gem other upstream 1257851 56219242 ~ 56220946 (+)
G1467219 NA other downstream 35385 57589865 ~ 57614300 (+)
G1469076 NA other downstream 952817 58507297 ~ 58507885 (+)
G1470607 NA other downstream 2547412 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 3417998 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 4001839 61555873 ~ 61558328 (+)
LOC110494206 LOC108254821 coding downstream 14716 57498305 ~ 57548178 (+)

Expression


Co-expression Network