G1468592 (hoxc12ba)


Basic Information

Item Value
gene id G1468592
gene name hoxc12ba
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 58488171 ~ 58488775 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1679843
CCCGCTGCTGTGCTTGGTGCGTGATTGCCAGGGGATGTCAACGCCTGAGCGATGCCTGTAGAGGCTTTGCTCCCTTCATTGAGCAGCGATGAACTGGAGTCAGATTCTAGGGATTGACAGGATAGCGGATCTTGGGTCAACTGCTCCACGCCATAGTCGTACTTGGAATATGTACCGTTGTTGCCAATCCCGTTGTGCAGTCCATGCTCCGTCGTTATGGAGGAAGAGGAGTCTCCTCTTGCCCTCTCTTCACGTTTGAGGTTCGCGCTTTCAGCGCAGGGTTCCCTGTTTCCGCCACCGTTGCTGTAAAAACATTTGCCTTCATCTTGCCTGGTGATTTCGCATGCACGGTTGAAAGAGGGGTTAATGGACATGGCACTGCTAAAGTAGGGTTGAGGATATCCATTGCACGGCTCCGACGCGGTCCAAGGAAGGGAGCATACATTGTCCCTTcttgggtaggagagagagggtagaccCGCCAGTTGTCCCCCGGACGCTCTAAAATTGGGGAGGTAAAATGTGTCTCCCGTGTGGATGTTTACCAACGGTCCCACAAACCCGGGATTAAGAAGATTATGCTCGCCCATTTCGGCGGGCCCGAC

Function

NR:

description
homeobox protein Hox-C12a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1679843 True 605 lncRNA 0.54 1 58488171 58488775

Neighbor

gene id symbol gene type direction distance location
trnar-ucu-6 NA coding upstream 142507 58345575 ~ 58345664 (+)
LOC110494225 NA coding upstream 179151 58305759 ~ 58309020 (+)
LOC110494220 LOC106583293 coding upstream 238746 58135834 ~ 58249425 (+)
LOC110494218 LOC106565452 coding upstream 359229 58070065 ~ 58128942 (+)
LOC110494215 LOC106565449 coding upstream 453391 57981152 ~ 58034780 (+)
LOC110494235 LOC106565463 coding downstream 207916 58696691 ~ 58707194 (+)
LOC110494238 LOC106565465 coding downstream 227297 58716072 ~ 58728214 (+)
LOC110494239 LOC106565466 coding downstream 344119 58832894 ~ 59011079 (+)
LOC100136832 lrrn1 coding downstream 721902 59210677 ~ 59245106 (+)
LOC110494244 NA coding downstream 769704 59258342 ~ 59266492 (+)
G1468591 NA non-coding upstream 620 58487284 ~ 58487551 (+)
G1468590 LOC107578812 non-coding upstream 1089 58484662 ~ 58487082 (+)
G1468555 NA non-coding upstream 65265 58422700 ~ 58422906 (+)
G1468553 NA non-coding upstream 66762 58421175 ~ 58421409 (+)
G1468552 NA non-coding upstream 68727 58419142 ~ 58419444 (+)
G1468593 NA non-coding downstream 610 58489385 ~ 58489646 (+)
G1468596 NA non-coding downstream 4630 58493405 ~ 58493646 (+)
G1469087 NA non-coding downstream 28525 58517300 ~ 58517499 (+)
G1469111 NA non-coding downstream 45750 58534525 ~ 58534793 (+)
G1469113 NA non-coding downstream 47762 58536537 ~ 58536815 (+)
G1467219 NA other upstream 873871 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 939993 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 1004582 57478797 ~ 57554480 (+)
G1467031 NA other upstream 1337828 57149303 ~ 57150343 (+)
G1467030 NA other upstream 1340430 57146488 ~ 57147741 (+)
G1469076 NA other downstream 18522 58507297 ~ 58507885 (+)
G1470607 NA other downstream 1613117 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 2483703 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 3067544 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 4209728 62698503 ~ 62698815 (+)

Expression


Co-expression Network