G1469849 (LOC106565475)


Basic Information

Item Value
gene id G1469849
gene name LOC106565475
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59247141 ~ 59247611 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1681186
TGGTTTGTTAATTGATTATCCTTAAACATTTAATGTAACCTGCCTGACTGATTTTGTTAATCAGTTCCAGAGTTAGTTGTTTAAGTTCTGAACTTTTCTCTCAGCATCTAAGAGGGACATGGGATGACCCCCAAGAAACGGTTTATCAGCCTCACAAGCAGTGAGGTTTTTGATCAGTTTCTCTCTACCAACATTTAGGAGCAGGCCTTCTGGCAGGTGGAGCGCCAGGGTCACATGGTCCCACATGTACCATGTATTGTAAACATTACCATCTGTTTCTACTATTTTGTCCATGTTGTTTATGGTTAACCCAACTTTTTGTGTTGCTGACATGGCTTGTGCTCGCCAGACAATGTgtctttctccttccccctctacaTTGTTTTCCCTGTAACCACAGAGAGCATCATCAGTGCCATCACCAAGAAATGGGTACTCCTCAAACTCCTTCACACTTGGAGAGTGAACAAG

Function

NR:

description
uncharacterized protein LOC110495179

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1681186 True 471 lncRNA 0.43 1 59247141 59247611

Neighbor

gene id symbol gene type direction distance location
LOC100136832 lrrn1 coding upstream 2035 59210677 ~ 59245106 (+)
LOC110494239 LOC106565466 coding upstream 236062 58832894 ~ 59011079 (+)
LOC110494238 LOC106565465 coding upstream 518927 58716072 ~ 58728214 (+)
LOC110494235 LOC106565463 coding upstream 539947 58696691 ~ 58707194 (+)
trnar-ucu-6 NA coding upstream 901477 58345575 ~ 58345664 (+)
LOC110494244 NA coding downstream 10868 59258342 ~ 59266492 (+)
LOC110494246 LOC106565476 coding downstream 35188 59282799 ~ 59438025 (+)
LOC110494249 LOC106565477 coding downstream 213703 59461314 ~ 59465333 (+)
LOC118940562 NA coding downstream 269969 59517580 ~ 59517708 (+)
LOC118940599 NA coding downstream 271227 59518838 ~ 59518979 (+)
G1469761 NA non-coding upstream 129606 59117285 ~ 59117535 (+)
G1469749 NA non-coding upstream 134382 59112540 ~ 59112759 (+)
G1469415 NA non-coding upstream 160705 59086047 ~ 59086436 (+)
G1469411 NA non-coding upstream 162702 59084225 ~ 59084439 (+)
G1469409 NA non-coding upstream 167167 59079569 ~ 59079974 (+)
G1469850 NA non-coding downstream 654 59248265 ~ 59248549 (+)
G1469851 NA non-coding downstream 1594 59249205 ~ 59249504 (+)
G1469871 NA non-coding downstream 157563 59405174 ~ 59405793 (+)
G1469990 NA non-coding downstream 203151 59450762 ~ 59451182 (+)
G1469076 NA other upstream 739256 58507297 ~ 58507885 (+)
G1467219 NA other upstream 1632841 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 1698963 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 1763552 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2096798 57149303 ~ 57150343 (+)
G1470607 NA other downstream 854281 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 1724867 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 2308708 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 3450892 62698503 ~ 62698815 (+)
G1473177 NA other downstream 3462728 62710339 ~ 62711136 (+)

Expression


Co-expression Network