G1470301


Basic Information

Item Value
gene id G1470301
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59614065 ~ 59618582 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1681669
ttgcagctgagccagtggtgcagattacccaaaatgctttgctctcgatattgttttttttactactggaaaaaggtaacatctattgaataagtaccccaccttgccatgaatgacatgtcatcaagaatttaccaaagtggtaggtagggggcgaactgctagacattgcaatgttaaaacacaatattaccgttaaaggagaagctgtgcaaaacactgtaaacagtttgagtagctgtaatatatcgttctttcgcagaggcgatatcatagcctatgaagtcaatctgaggcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtcttatgtgagactgctatacatgtgaaagagaagatagtgacaagaccaaacatgggctgcatccaacTCATTTATtctataacctttttgatgcttcagctgacagttgaacattatcttgcaactaggtagaaacagaaaaaaggtgtcagtagtatatgctgtgtcagaagtagggttcgggagaatgaactcagcaacagcgggtttagGCCCACAATTTcagttttgcccccacactgcctcgaattgttgcaagtagtatgttacccaaagccacttgacccactttgtcttgcctcctctagaggcagctatggcaagatttacatgaaaacgttttgggttcgtcccccattgcagctgagccagtggtgctgaTTActcaaagtgctttgctctcgatattggttttgtccaggaaaaaagggaacatctattgaacaagtaccccaccttgccattaattacatgtaatcgagaatccaccagtgttaggtagggggcgaactgctagacataccaatgtaacaa
>TU1681670
ttgcagctgagccagtggtgcagattacccaaaatgctttgctctcgatattgttttttttactactggaaaaaggtaacatctattgaataagtaccccaccttgccatgaatgacatgtcatcaagaatttaccaaagtggtaggtagggggcgaactgctagacattgcaatgttaaaacacaatattaccgttaaaggagaagctgtgcaaaacactgtaaacagtttgagtagctgtaatatatcgttctttcgcagaggcgatatcatagcctatgaagtcaaTCTGAGgcgtgattattgctggttgaaaacttaacccaataccccgcttgggatgacttgaaatatagtcagccttggcaatttttgatagtcttatgtgagactgctatacatgtgaaagagaagatagtgacaagaccaaacatgggctgcatccaacTCATTTATtctataacctttttgatgcttcagctgacagttgaacattatcttgcaactaggtagaaacagaaaaaaggtgtcagtagtatatgctgtgtcagaagtagggttcgggagaatgaactcagcaacagcgggtttagGCCCACAATTTcagttttgcccccacactgcctcgaattgttgcaagtagtatgttacccaaagccacttgacccactttgtcttgcctcctctagaggcagctatggcaagatttacatgaaaacgttttgggttcgtcccccattgcagctgagccagtggtgctgaTTActcaaagtgctttgctctcgatattggttttgtccaggaaaaaagggaacatctattgaacaagtaccccaccttgccattaattacatgtaatcgagaatccaccagtgttaggtagggggcgaactgctagacataccaatgtaacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1681669 False 916 lncRNA 0.42 2 59614065 59618582
TU1681670 True 916 lncRNA 0.42 2 59614065 59618582

Neighbor

gene id symbol gene type direction distance location
LOC118940527 NA coding upstream 976 59612856 ~ 59613886 (+)
LOC118940558 NA coding upstream 2053 59611890 ~ 59612012 (+)
LOC118940553 NA coding upstream 3306 59610618 ~ 59610759 (+)
LOC118940526 NA coding upstream 4570 59609354 ~ 59609495 (+)
LOC118940534 NA coding upstream 5843 59608081 ~ 59608222 (+)
LOC118940559 NA coding downstream 607 59619189 ~ 59619311 (+)
LOC118940560 NA coding downstream 1665 59620247 ~ 59620369 (+)
LOC118940556 NA coding downstream 2722 59621304 ~ 59621436 (+)
LOC118940557 NA coding downstream 3779 59622361 ~ 59622486 (+)
LOC110494250 LOC106565597 coding downstream 39219 59657801 ~ 59670107 (+)
G1470290 NA non-coding upstream 107728 59506034 ~ 59506337 (+)
G1470277 NA non-coding upstream 117939 59495827 ~ 59496126 (+)
G1469990 NA non-coding upstream 162883 59450762 ~ 59451182 (+)
G1469871 NA non-coding upstream 208272 59405174 ~ 59405793 (+)
G1470331 NA non-coding downstream 20624 59639206 ~ 59639439 (+)
G1470335 NA non-coding downstream 24653 59643235 ~ 59643831 (+)
G1470341 NA non-coding downstream 29158 59647740 ~ 59647996 (+)
G1470383 LOC106583170 non-coding downstream 98027 59716609 ~ 59718373 (+)
G1470431 NA non-coding downstream 291826 59910408 ~ 59911460 (+)
G1469076 NA other upstream 1106180 58507297 ~ 58507885 (+)
G1467219 NA other upstream 1999765 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2065887 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2130476 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2463722 57149303 ~ 57150343 (+)
G1470607 NA other downstream 483310 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 1353896 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1937737 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 3079921 62698503 ~ 62698815 (+)
G1473177 NA other downstream 3091757 62710339 ~ 62711136 (+)

Expression


Co-expression Network