G1470538


Basic Information

Item Value
gene id G1470538
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 59991004 ~ 59993399 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1681929
caaataaaaccacccacaTTTTAAATTCGGCCCACCAGTTGGTGAATCCTGCTGTATGGAAAATGAATGTTTATGAGCATTTCACACATCACTGACTGAACACACACTGGGCTACTGTTTATGAAACTATGGTCCATAATATCGGTCAGTCAACTATTGCAATTTCATGACAAGATGAACATACTAACATCACACAAATGTCTGGAACACAATTTTAGAGGCTAATTCTAAATTCCACAAGTCAATTTTCACTTAGTCATGCATTCATGTCAGTGGGAGACTTAGTGAAAAATCTATTTAGTGGAAGTTAGGATTCTCCCCTTACGCTCTATAGTCACACGCAGGGTCTATCTCGCTCTCTGACATACAGAAGCCTTCTCGTTTCCTGTGCTTATTGTGTACACGTATGCCACCAGCCCATCCTATAATCCCTGAGCACATCAGACAGCTTCTGCTCCTACTGTCATGGAGCTCTATACCAAGGGGATAGGCACTTAGATACTAAGCATGAAAAAGATTAACCTAAACCCCTTGTTGCCAGTAACTTATTTATTTTGCCGGAGATCTTTTATTAGTTGAGACTATACACAAGTTAAATTTCCCCCGCCTTGAGGTGTAATTATTTTGGGCAAAAACACCCTCTCGACGGATTGGAGACAAATTCCATAATAGTTTGTGGGAGGTTACACCCTGGGTTCACTGTTGAAGACAGACATATCCATCCTCTTGACAGAACACGAGGGGAAAGGTAACGTGACGCAGGGTTCAGTTACAGCAATAACAAAATGATGAATAGAGCATTGACATGTTAAAAAAAGATGAAACAAACAAGGTATTCCTCAacacaaaatgtgaagaaaaaaaaaagacatcACTCAATGACATTTCATAACAAATATTTCAGTGACGTGTCCTACAAAAGTGATATACTCCAAAAGACAGTATAGTTTTTTAAATGTTGGAAAGCACCCGAGAGTAGGACATGATCTTTAACCCGAGAGTAGGACATGATCTTCATATAGACGTCCCCTTATGGAGATTTGCATTCAAGAATATGTCGTAGGTTTACATTTTCTCTTATCATTTAGAATGTAATTGGTTTTCATTGAATTAGAACAAACCATTCTACCACTGTATTCACTACACACATTTTAGCTAAATGCAGGAACATTAATATTTGttttgaatataaaaatatattgcactactttttcCTCAACTTAGCCTGGGTAAATGATTTATAAATCTAATGAAAAGTTTGTTGATTACTACATAAAGTATAATCTAAAACCTAACCATTTCAAGTGTTATATTAGGACATTGTCATTGTTTGCATCAGTCATTTGATATCACTTTAAAAAGTGGGAGAGAAAAGCAGTATGATAAAAACCAGCAATAATATGAGCAGACACCAGCACACAGACAGTGGTCTTCATCAGTCTCCTCTAATATCCATGCAGTCAATAAGGGTTTCATACACATTGTCAGAATGCAGAAttcctataaaaaaaaaaaaaataatacatttttaaaaaggccaGACATTGAATATACTCAAACTTTGGCTCACTccatgacaaagggaaaacaataTCTCACGCTTATTCAGCCCTAAAAAGAGTTTCCCCATGGATTAACAGCTGCATGAAGAAGATAAATATGTAAGGAGAGATTTACACTGTAGACAGGGGAGAGTTGCAAATAGACAAAAACACACTACATTCAGTGATCGAGTGTGTGTATGTCACGGGGTGTGAGTATGTACATACGCAATGACAGTGCTTCCAAGCAGGGATCCATCAGAAAAGGGGCAAAAGGGGCGGGACGACTCGGTATGTTCAGTGATTATCATTGGCTGTGagcgagcatgtgtgtgtgtttggggggtagGGTGGGGGGTTTGTGTGGCTTTGACAGGATGTCAACTCCCAACATCCTTTCCTGGCTGCCACTGTATCCAAGGTCTGAGCATAGGTTGGAGACAGTACTTCTCACCCCACCCCTTCTATTATCAACTGGTGGGATTTCAGATTTCAAATCAGGTCCCTTTCAATCTCTCACATAATTGTACCAGTCCGGCCTCCTAATGTTCTTATTGGCTCCCTGCGCATCATCTGGGGGCGGGCTGAGGCTGTGGCGCCATGAGGACCCCTCCCTGGTGGGCCGCCCCCATCCCGGCCAGGACCGACATGGCCACTGCCTCAGCCGCGCATACGCTCAGCCCGTTGACGGTGATGGCACCAGGGCTGGGGACAGGGGCCGAAGGCCCGTGCTGGATGGCCAAGGCTGTGGAGCCCGTAGGCTCGGAGGGGGGATCCCtggagctctcctctc
>TU1681930
caaataaaaccacccacaTTTTAAATTCGGCCCACCAGTTGGTGAATCCTGCTGTATGGAAAATGAATGTTTATGAGCATTTCACACATCACTGACTGAACACACACTGGGCTACTGTTTATGAAACTATGGTCCATAATATCGGTCAGTCAACTATTGCAATTTCATGACAAGATGAACATACTAACATCACACAAATGTCTGGAACACAATTTTAGAGGCTAATTCTAAATTCCACAAGTCAATTTTCACTTAGTCATGCATTCATGTCAGTGGGAGACTTAGTGAAAAATCTATTTAGTGGAAGTTAGGATTCTCCCCTTACGCTCTATAGTCACACGCAGGGTCTATCTCGCTCTCTGACATACAGAAGCCTTCTCGTTTCCTGTGCTTATTGTGTACACGTATGCCACCAGCCCATCCTATAATCCCTGAGCACATCAGACAGCTTCTGCTCCTACTGTCATGGAGCTCTATACCAAGGGGATAGGCACTTAGATACTAAGCATGAAAAAGATTAACCTAAACCCCTTGTTGCCAGTAACTTATTTATTTTGCCGGAGATCTTTTATTAGTTGAGACTATACACAAGTTAAATTTCCCCCGCCTTGAGGTGTAATTATTTTGGGCAAAAACACCCTCTCGACGGATTGGAGACAAATTCCATAATAGTTTGTGGGAGGTTACACCCTGGGTTCACTGTTGAAGACAGACATATCCATCCTCTTGACAGAACACGAGGGGAAAGGTAACGTGACGCAGGGTTCAGTTACAGCAATAACAAAATGATGAATAGAGCATTGACATGTTAAAAAAAGATGAAACAAACAAGGTATTCCTCAacacaaaatgtgaagaaaaaaaaaagacatcACTCAATGACATTTCATAACAAATATTTCAGTGACGTGTCCTACAAAAGTGATATACTCCAAAAGACAGTATAGTTTTTTAAATGTTGGAAAGCACCCGAGAGTAGGACATGATCTTTAACCCGAGAGTAGGACATGATCTTCATATAGACGTCCCCTAATCGAGATTTGCATTCAAGAATATGTTGTAGGTTTACATTTTCTCTTATCATTTAGAATGTAATTGGTTTTCATTGAATTAGAACAAACCATTCTACCACTGTATTCACTACACACATTTTAGCTAAATGCAGGAACATTAATATTTGttttgaatataaaaatatattgcactactttttcCTCAACTTAGCCTGGGTAAATGATTTATAAATCTAATGAAAAGTTTGTTGATTACTACATAAAGTATAATCTAAAACCTAACCATTTCAAGTGTTATATTAGGACATTGTCATTGTTTGCATCAGTCATTTGATATCACTTTAAAAAGTGGGAGAGAAAAGCAGTATGATAAAAACCAGCAATAATATGAGCAGACACCAGCACACAGACAGTGGTCTTCATCAGTCTCCTCTAATATCCATGCAGTCAATAAGGGTTTCATACACATTGTCAGAATGCAGAAttcctataaaaaaaaaaaaaataatacatttttaaaaaggccaGACATTGAATATACTCAAACTTTGGCTCACTccatgacaaagggaaaacaataTCTCACGCTTATTCAGCCCTAAAAAGAGTTTCCCCATGGATTAACAGCTGCATGAAGAAGATAAATATGTAAGGAGAGATTTACACTGTAGACAGGGGAGAGTTGCAAATAGACAAAAACACACTACATTCAGTGATCGAGTGTGTGTATGTCACGGGGTGTGAGTATGTACATACGCAATGACAGTGCTTCCAAGCAGGGATCCATCAGAAAAGGGGCAAAAGGGGCGGGACGACTCGGTATGTTCAGTGATTATCATTGGCTGTGagcgagcatgtgtgtgtgtttggggggtagGGTGGGGGGTTTGTGTGGCTTTGACAGGATGTCAACTCCCAACATCCTTTCCTGGCTGCCACTGTATCCAAGGTCTGAGCATAGGTTGGAGACAGTACTTCTCACCCCACCCCTTCTATTATCAACTGGTGGGATTTCAGATTTCAAATCAGGTCCCTTTCAATCTCTCACATAATTGTACCAGTCCGGCCTCCTAATGTTCTTATTGGCTCCCTGCGCATCATCTGGGGGCGGGCTGAGGCTGTGGCGCCATGAGGACCCCTCCCTGGTGGGCCGCCCCCATCCCGGCCAGGACCGACATGGCCACTGCCTCAGCCGCGCATACGCTCAGCCCGTTGACGGTGATGGCACCAGGGCTGGGGACAGGGGCCGAAGGCCCGTGCTGGATGGCCAAGGCTGTGGAGCCCGTAGGCTCGGAGGGGGGATCCCtggagctctcctctc

Function

NR:

description
cyclic AMP-dependent transcription factor ATF-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1681929 False 2334 lncRNA 0.42 2 59991004 59993399
TU1681930 True 2334 lncRNA 0.42 2 59991004 59993399

Neighbor

gene id symbol gene type direction distance location
LOC110494251 LOC106565596 coding upstream 103962 59857225 ~ 59887042 (+)
LOC110494250 LOC106565597 coding upstream 320897 59657801 ~ 59670107 (+)
LOC118940557 NA coding upstream 368518 59622361 ~ 59622486 (+)
LOC118940556 NA coding upstream 369568 59621304 ~ 59621436 (+)
LOC118940560 NA coding upstream 370635 59620247 ~ 59620369 (+)
LOC110494255 LOC106565587 coding downstream 69851 60063250 ~ 60078437 (+)
LOC110494256 LOC106565588 coding downstream 85351 60078750 ~ 60095370 (+)
LOC110494259 LOC106565584 coding downstream 251386 60244785 ~ 60247910 (+)
srgap3 srgap3 coding downstream 272080 60265479 ~ 60383800 (+)
rad18 rad18 coding downstream 440527 60433926 ~ 60508595 (+)
G1470533 NA non-coding upstream 10339 59980060 ~ 59980665 (+)
G1470431 NA non-coding upstream 79544 59910408 ~ 59911460 (+)
G1470383 LOC106583170 non-coding upstream 272631 59716609 ~ 59718373 (+)
G1470341 NA non-coding upstream 343008 59647740 ~ 59647996 (+)
G1470335 NA non-coding upstream 347173 59643235 ~ 59643831 (+)
G1470549 NA non-coding downstream 6663 60000062 ~ 60000432 (+)
G1470550 NA non-coding downstream 7565 60000964 ~ 60001173 (+)
G1470537 NA non-coding downstream 9255 60002654 ~ 60004780 (+)
G1470551 NA non-coding downstream 11752 60005151 ~ 60005493 (+)
G1470553 LOC106565589 non-coding downstream 12749 60006148 ~ 60009096 (+)
G1469076 NA other upstream 1483119 58507297 ~ 58507885 (+)
G1467219 NA other upstream 2376704 57589865 ~ 57614300 (+)
LOC110494206 LOC108254821 other upstream 2442826 57498305 ~ 57548178 (+)
G1467159 LOC106565433 other upstream 2507415 57478797 ~ 57554480 (+)
G1467031 NA other upstream 2840661 57149303 ~ 57150343 (+)
G1470607 NA other downstream 108493 60101892 ~ 60104007 (+)
G1471723 LOC100380707 other downstream 979079 60972478 ~ 60999063 (+)
LOC110494283 LOC106565563 other downstream 1562920 61555873 ~ 61558328 (+)
G1473171 LOC106581772 other downstream 2705104 62698503 ~ 62698815 (+)
G1473177 NA other downstream 2716940 62710339 ~ 62711136 (+)

Expression


Co-expression Network